Transcript Information: S_Transcript_405074.p1


Annotated TAIR IDATMG00300.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)ORF145A
Annotation TypeHomolog
Chromosome PositionchrM:89617-90054 | Reverse length=145
E-Value1E-05
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20.08047427568247
Replicate 30
Condition 3: 24 Hour
Replicate 10.15715743518413
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_405074.p1 GENE.S_Transcript_405074~~S_Transcript_405074.p1 ORF type:5prime_partial len:278 (+),score=20.07,gag_pre-integrs|PF13976.2|8.6e-15,rve|PF00665.22|8.7e-07 S_Transcript_405074:3-836(+)
TGTCTCATGGCCAAAGGAGCATCGGATATTAAATCCAACGAAGAGGTCAAAGTGAGGGGGAACAGCACATGGTACCTAGATAGTGGTTGTTCAAAACATATGACTGGAGACAAATCAAGATTCATCTCACTTTCGACCTTTGCTGGAGGTACCGTCACCTTTGGAGATAATAAGAAAGGTGAGATCATTGGAATAGGAAAGATAGGTAAGTCTTCTTTCCATTCCATTGATAATGTGCTATTAGTGAAAGGCTTGAAACATAGCTTGTTAAGTATATCTCGGTTTTGTGACAAAGGTAATCATGTTCAATTCAATGCTGACAAGTGTATTGTGCTTAGAAAGGGAACTAATGAAGTTGTCTTGGAAGGAGAAAGGTTTGGAAATACATACAAGGTTGATCTTCGAAACCTTCCTATTGAAAATCTAACTTGTTTGAGTGCAGTGGGAAACGACTCTACTCTGTGGCACAAGAGACTAGGTCATGCTAGTCCAAACTTGATACACAAGTTATATTCACAAGACTTAGTAGAAGGATTGCCTCAAATTAAAGCTAATGAAATTAAGTTTTGTGATGCGTGTGTCAAAGGTAAACAAGTAAGATGTTCCTTTCATTCCAAGAATGTGGTAAGTACTGAAAAACCCTTTGAATTACTTCACATAGACTTATGTGGACCCATGACTGTAAGAAGTCGTGGAGGTAAGCACTATGTACTTGTTGTTGTTGATGACTATACTAGATATACTTGGACTTTGTTTTGTCAACCAAGGATGAAACATTTGATGAATTCGTTACCTTGGTTAGAAAAATGGAAAAGCAATCTGGTAATGTGTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_405074.p1 GENE.S_Transcript_405074~~S_Transcript_405074.p1 ORF type:5prime_partial len:278 (+),score=20.07,gag_pre-integrs|PF13976.2|8.6e-15,rve|PF00665.22|8.7e-07 S_Transcript_405074:3-836(+)
CLMAKGASDIKSNEEVKVRGNSTWYLDSGCSKHMTGDKSRFISLSTFAGGTVTFGDNKKGEIIGIGKIGKSSFHSIDNVLLVKGLKHSLLSISRFCDKGNHVQFNADKCIVLRKGTNEVVLEGERFGNTYKVDLRNLPIENLTCLSAVGNDSTLWHKRLGHASPNLIHKLYSQDLVEGLPQIKANEIKFCDACVKGKQVRCSFHSKNVVSTEKPFELLHIDLCGPMTVRSRGGKHYVLVVVDDYTRYTWTLFCQPRMKHLMNSLPWLEKWKSNLVMC*

Click here to download the sequence:
Link to NCBI Protein BLAST