Transcript Information: S_Transcript_405075.p1


Annotated TAIR IDATMG00300.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)ORF145A
Annotation TypeHomolog
Chromosome PositionchrM:89617-90054 | Reverse length=145
E-Value6E-06
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.22876505359754
Replicate 20.12643432411183
Replicate 30.21137806399542
Condition 2: 8 Hour
Replicate 10.24441708099866
Replicate 20.19230815449622
Replicate 30.48861541787923
Condition 3: 24 Hour
Replicate 10.06259278937133
Replicate 20.25975715273751
Replicate 30.21680840462851


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_405075.p1 GENE.S_Transcript_405075~~S_Transcript_405075.p1 ORF type:3prime_partial len:349 (+),score=35.26,rve|PF00665.22|2.1e-24,gag_pre-integrs|PF13976.2|1.3e-14 S_Transcript_405075:259-1302(+)
ATGACTGGAGACAAATCAAGATTCATCTCACTTTCGACCTTTGCTGGAGGTACCGTCACCTTTGGAGATAATAAGAAAGGTGAGATCATTGGAATAGGAAAGATAGGTAAGTCTTCTTTCCATTCCATTGATAATGTGCTATTAGTGAAAGGCTTGAAACATAGCTTGTTAAGTATATCTCGGTTTTGTGACAAAGGTAATCATGTTCAATTCAATGCTGACAAGTGTATTGTGCTTAGAAAGGGAACTAATGAAGTTGTCTTGGAAGGAGAAAGGTTTGGAAATACATACAAGGTTGATCTTCGAAACCTTCCTATTGAAAATCTAACTTGTTTGAGTGCAGTGGGAAACGACTCTACTCTGTGGCACAAGAGACTAGGTCATGCTAGTCCAAACTTGATACACAAGTTATATTCACAAGACTTAGTAGAAGGATTGCCTCAAATTAAAGCTAATGAAATTAAGTTTTGTGATGCGTGTGTCAAAGGTAAACAAGTAAGATGTTCCTTTCATTCCAAGAATGTGGTAAGTACTAAGAAACCCTTTGAGTTACTTCACATAGACTTATGTGGACCCATGACTGTAAGAAGTCGTGGAGGTAAGCACTATGTACTTGTTGTTGTTGATGACTATACTAGATATACTTGGACTTTGTTTTTGTCAACCAAGGATGAAACATTTGATGAATTCGTTACCTTGGTTAGAAAAATGGAAAAGCAATCTGGTAATGTGTTAGTTAAAATTAGATCCGATCATGGAGGAGAATTCGAAAATAACACATTCCTTGATTATTGTAGGGAACACGATGTGGACCACAACTTTTCAGCATCAAGGACTCCACAACAAAATAGTGTAGTGGAGAGAAAGAATAGAACCCTTGAAGAAATGGCTAGAACAATGCTTCTAGCTAGTGGTTTGCCAAGAAACTTTTGGGCCGAAGCTGTTAACACTGCATGTTATATTATCAATAGATCAATGCTTAGACCTATTCTCAAAAAGACATCCTATGAATTGCTTAGAGGACGAAAAGCTAATATATCACAC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_405075.p1 GENE.S_Transcript_405075~~S_Transcript_405075.p1 ORF type:3prime_partial len:349 (+),score=35.26,rve|PF00665.22|2.1e-24,gag_pre-integrs|PF13976.2|1.3e-14 S_Transcript_405075:259-1302(+)
MTGDKSRFISLSTFAGGTVTFGDNKKGEIIGIGKIGKSSFHSIDNVLLVKGLKHSLLSISRFCDKGNHVQFNADKCIVLRKGTNEVVLEGERFGNTYKVDLRNLPIENLTCLSAVGNDSTLWHKRLGHASPNLIHKLYSQDLVEGLPQIKANEIKFCDACVKGKQVRCSFHSKNVVSTKKPFELLHIDLCGPMTVRSRGGKHYVLVVVDDYTRYTWTLFLSTKDETFDEFVTLVRKMEKQSGNVLVKIRSDHGGEFENNTFLDYCREHDVDHNFSASRTPQQNSVVERKNRTLEEMARTMLLASGLPRNFWAEAVNTACYIINRSMLRPILKKTSYELLRGRKANISH

Click here to download the sequence:
Link to NCBI Protein BLAST