Transcript Information: S_Transcript_4060.p1


Annotated TAIR IDAT1G55540.2
Annotated Gene NameNuclear pore complex protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:20734759-20743049 | Reverse length=1819
E-Value8.3E-217
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.8242543514001
Replicate 26.5146551353331
Replicate 36.2725145436753
Condition 2: 8 Hour
Replicate 18.8845170657751
Replicate 27.7960476730189
Replicate 37.9122183877426
Condition 3: 24 Hour
Replicate 16.9856620845594
Replicate 26.1773449365298
Replicate 36.7087924448755


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_4060.p1 GENE.S_Transcript_4060~~S_Transcript_4060.p1 ORF type:complete len:1673 (+),score=407.31 S_Transcript_4060:841-5859(+)
ATGGCGGCAGGTACAGTTCCTGACCCCAAAACCTTAAAAGTCGAAGAGATTTTAGAAGGCGACCGTATCGAGACAGACGACTATTTCTTCAGCAAGATTGGCGAACCCGTTCCTCTCCTTTCCGACGCTTCCTTTTCCCCTTTCGACCTCAACTCCCCTCCTGCCAAACCCTTGGTCGTCTCTCAAAGTTTTGGTCTTCTATTTGTCGCCCACTCTTCTGGATTTTGTGTTGCTAAGACCAAGGATGTGGTTGCCTCTGCCAAGGAGATTAAGGATAAAGGAACTGGCCCTTCTGTTCAAGCGTCCAGTGTTGTTGATGTTCCAATTGGCAGGGTTTCCATTTTGGCACTATCTACTGATTCTTCATTCCTTGCTGCTGTTGTCGGTCCAGAGGTTTTCTGTTTTTCCGTTACTTCGCTCCTGAGTAAGGATCCAAAACCAATTTGCTCTAGTTCAGTTGAATCAGATTCTGTCAAGGACATGCTTTGGAACAAAGATGTGGAGGATTTCTACATTGTCTTGACACATGATCGACAACTATATGTTGGAGCTGTACATAAACCTCTAAAATGTGTCATGGATGAGATTGATGCAGTTGAAAGGAGTGCAGATGGAAATTTAGTGGCCATTGTGAGAAAGAACATTCTCAGCTTTTTCTCCACAAACTTTAAGGAAATATTGCGCATCTTCCTTCCACTGGACTCATGGATGGATGATAGGATATCCAGCTGCCCTGTAAACGTGGACAGCATTATGTGGGTCCGTTCTGATTGCATTGTTGTTGGATGCCTTCAACAAACTGAAGATGGCGTCGAGGAAAATTACTTTTTACAAGTTATCATGAGTAAAGATAGCAAAGTGATTGATGGTTTCTCAAAGCTTGCTGCAGTTTGTTTTGGTGATGTATTTCCAGGCATGGTTGATGATATTGTGCCATTTGGCTGTGGACCACACCTATTTATGAGTTATCTACAACAGTGCGAGATTGCCTTTGTTTCTAACAGGAAGAATACCGATCAGCATATTATGTTGTTTGCTTGGTCACAAGAGAATAATCAAGTTTCTATTGTCGATATTGAAAGAGACAGTTTGCTTCCTAGAATTGAGCTCCAAGAAAGTGGGGATGACAACCTGGTTCTTGGGATATGCGTGGATAAAACTTCAGTTTATGAAAATGTAAATGTCAAGATTGGAGAAGAGCAAAGAGAACTGCCACCACATTGCATTCTTGTATGTCTGACACTTGAGGGGAAGCTCATTATGTTTAATTTTGCAAGTATTGCAGGAATTAAGAGCTCAAGTCTGGCTTTATCTGCCCCTTCCGATGATGCACAAAGTAATACTGTGGTTGTAACGTCAGATCTGGGAGGAGCTCCTTCACTATTGGAGGAGGATAGCAAAAAACAATCTGCTATACAGTTAGGGTCATGTAATATAGATGAAAGAAAAGTTGGGTTTGGAATTGGTGGAGCTTCTGTTAAACGGGATCTGAAGCCACCTGACTTGCATGAAGGTTCTACCAATGCTAATAATTCTGATGTAAACTTGAGAAAGGAGCCAGAGAAACCTTCGGTGGATGTCAAGACTTGTAAGCCTTTACATTCAGGGGATTCTATTCAGGAAACTTCTAACCAGCTCATGACGACTATTTTACATGTGAGAGGCTCTAATACTGTTCTCGGAGATTGCATTGAGACTGAAAGGTGGAAGGCTGAGCGTCATATATCCATAACTGATCAATCTCCAGGGACAATAATGCCTAAGACTGGAAATAACATAGTAAAAGAGATGGGACCTGGTGTCTCACAGAGCACTAAATACCTTGTGGGTTCGGATAGTTCTTCAGCAATACCAGGTTTCTCTAGTGCGAGGACTACACACGTGTCAAAAAGTACCACAAAAAGCACCATATCTGGGAGTGTGACAAGCTCTCCTGGGAACTCTAGCTATCCATTAGACTCATTTACTTCTTCAACTGGAAGGGGTGTCATACACGGTCAGAAGGCTGCAACCGGGAGTGGTGTCACTGGAATATCACATGGTATATCTAGCTCAAAAATGCATTCTCAAAAAGGTGTGGCATCAGACAACTCTACTGGTCCAAGTCATCCAGTGACGGCGAACTATAAAAACATTTCTTTTTCTCAGCAGCTGAACTCTGAACAAAAAATGTCAAAGCAGCTCTGCAATGTACAAAACATGACAGATGAGTTGGACAGACTTCTGGAATGTATAGAGAAAGCAGGAGGTTTCAGGGATGCCTGCACTACTACTCATATAAGCTTGCTAGAAACATTAGAGGAGGGCATGGATAGTCTATCTGAGAAAAGCAGAATGTGGCAGATTCTTACAGAGGAGCAACATAGGGAGATGCAAGTCCTCCTCGATAGAACTGTGCAAGTTGTGGTGAGGAAAACACACATTGAAGGCATTATTAGGCAAAGTACTGACGGGAAATTTTGGGGCTTGTGGAATTGCCGAAAGTTGAGTTCTGAACTAGATCTGAAGAGGCAGAGTGTATCAAATTTGAGTCAGGATCTGGTCAACCAGATGATTGAACTGGAAAAGCATTTCAATGCCCTTGAGCTTAACCTATTTGGCAAAAGCAGTGGTAATGACGTTTCTCAAGCCCTCAAGTGTAAATCTACTCCATCAAGGTACATTCAGTCATTACATGCTATTCACAAGGCAATGGTATCACAACTAGCTGCTTCGCAGCAGCTCTCTGAATATTTGTCCAGACAAATGGCTGTCCTGGGCATAAAATTATCTCCGGAAAAACAAGATAATGTCAAAAAGCAATTGTTTGAGTCAATTGGAATATCTGATCACAGTGACTATCCTGGTTTCCCAAAAACAGGAAAGGTGATCAACTCCTCATCAAACAAAAAGCTATTTGTTTCCAGCTCAGATAAAGCGCATAATGAGTCCAGGAGGAATCAATTAAGTAGTTTGAGTTATCATGATCCTGAAACTGCAAGGAGAAGGAGAGATTCACTTGATCGGAACTGGGCAAACTTTGAGGCTCCTAAAACAACAGTCAAAAGGATGCTGGTAGAAAATCAACATCAGAATGTGATTGCTTCATTCTCTTCATTGGACAAGCAACTTAGCAGCCCACGCAAGCTAGAACCTGCAACATCTTCATATCCAAAGGCTCTTCCTGTGCGAAATAGGAGCGGATGCATGGATGTCCTGAAGAAACTCAATTCCGAAGATATGGCATCTTCCATATTCAAATGGGCTGGAGAAATCCCTGAAGTGTCACGAGTTCAAACTGAGGAAACTTCTAGACTGCAAGCTTTACAAGGAAGCAACTATTCAGCAATCCAAAACTCAGCTACTTTGACATCAGACTTATCATCACGGTCATCATCACCAACATTATTGGATCTGAATATAAAGAAGGAAAATAATCACTCCTCTGCTGGTGTACCATGGACTGAGAGAGGACATGGTGATAAGTCCAAATCAGCTATAATTAAGGACTTAAAACCTTCTGAATCCCAGAATGGTTATGAAAAATCGACCATTCAAGGGGTGCAACCAAAACTATTATCCTCGCCAAAAAAATGCAGCGAGATGCCTATTTCTTATAGCAAAGAAACTGCGCTACCTAATGGTGGTGGAAGCTCATTGCGTCCGTTTACTCATGATGCTGTATCCTCTACTTCAGAAACCCCGCCTATGAGGCTGTCATCAGTCTCTGCCTCTTCATCACCTTCTCAGAGTGTGCAGGCCTTACCATTTACGTCCGTAGAGGGTGGATCTATAACCAGTGCGAAGACGGTCAAGGATACCAACAGTCCAATGTTGCAACTTCAACCATCGTCGTCTTTTGCTTCTCCCTCGATACTACATGATAGTTTCTTTTCTTCCAAGGATCCAAAGATCAAAGAGTCCCATTCTATGGAATCTTCCACAAATTCAGTAGGGCAATCTCCAAAAATAGATCCTCAACCTACTCTCAACAAGGTTGGTTCAGACACTCCAGCAAGTCCAGCTTCAACTCCACTGCCTCCTCAGAAGCTGGAGTCTGTCATTGATGGCTTGAAGTTTGAATCTGTGACGCCATCTGCTCGTTCAAGTGACATCCCGAAAGAAGCTCTTTCTGGAAGCCCTCATGCTCTCAGTAGAACTGTGACACTTGCATCTGATGTGGTAACGAATACTCCATCAGAAAAGAATTCTCCAGCATACACGTTGCCTGCAGCTACGCTCTCAGATTCTGATGGTTACACTGGTGGAAAGAACATTGTTGATGCAGCAGTAACTCAGGAGGATGAAATGGAGGAAGAAGCACCCGAGCCAAACTCTACTGCAGACCTTTCTCTAGGAGGCCTTGCTGGGTTTGGATTAGGGTCAGTGTCCAGCACTACAGCTTCTAAATCGAATCCATTTGGTGTTTCAGTTAGTAGTGCAACAGTAAATACATCAAGTTCAATATCTTTGCCCGTCCCCTCTGGAGAGCTCTTCCGTCCTGCATCTTTTAGCTTCCAATCTCTTCAGACTTCCCAACAGTCACAGCCTGCCAGTATAGGAGCTACTAGTGGTGCATATGGTTCTGGAATTCCTCCACAGCAGCCTTCCTCCGGTGGTTTCGGGCAGCCAGGGCAGATTGGCTTGGGACAAGCAGCTTTGGGTTCAGTTCTTGGTTCGTTTGGCCAATCAAGACAATTTGGTGCCGCCATGCCTGGCAGTGGTTTTGGGGGTAATCAGTCTGCTGGTGGCTTTCTAAATGCTCCCACTGGTGGTGGAGGCTTTGCCAGTGTTGCTCCCACTGGTGGGGGTTTTGCAGGCCTTGGCGCCACGGCCAGTGGCTTTGCAGCTGCTGGTGCCGGGGCTACTGGAGTTGGTTTTGCTGCTGCAGCTTCTGGTGGGGGTGGGTTTGCTGGAGCTGCTAGTGGGGGTGGTGGATTCGGAGCTTTCAGCAAACAAGGGAGTAGCGGGTTTTCCGGACTTCGCAGTGGTGCTGGGGGAGGACAGCCATCATCGCTGTTCACGCAGATAAGGAAATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_4060.p1 GENE.S_Transcript_4060~~S_Transcript_4060.p1 ORF type:complete len:1673 (+),score=407.31 S_Transcript_4060:841-5859(+)
MAAGTVPDPKTLKVEEILEGDRIETDDYFFSKIGEPVPLLSDASFSPFDLNSPPAKPLVVSQSFGLLFVAHSSGFCVAKTKDVVASAKEIKDKGTGPSVQASSVVDVPIGRVSILALSTDSSFLAAVVGPEVFCFSVTSLLSKDPKPICSSSVESDSVKDMLWNKDVEDFYIVLTHDRQLYVGAVHKPLKCVMDEIDAVERSADGNLVAIVRKNILSFFSTNFKEILRIFLPLDSWMDDRISSCPVNVDSIMWVRSDCIVVGCLQQTEDGVEENYFLQVIMSKDSKVIDGFSKLAAVCFGDVFPGMVDDIVPFGCGPHLFMSYLQQCEIAFVSNRKNTDQHIMLFAWSQENNQVSIVDIERDSLLPRIELQESGDDNLVLGICVDKTSVYENVNVKIGEEQRELPPHCILVCLTLEGKLIMFNFASIAGIKSSSLALSAPSDDAQSNTVVVTSDLGGAPSLLEEDSKKQSAIQLGSCNIDERKVGFGIGGASVKRDLKPPDLHEGSTNANNSDVNLRKEPEKPSVDVKTCKPLHSGDSIQETSNQLMTTILHVRGSNTVLGDCIETERWKAERHISITDQSPGTIMPKTGNNIVKEMGPGVSQSTKYLVGSDSSSAIPGFSSARTTHVSKSTTKSTISGSVTSSPGNSSYPLDSFTSSTGRGVIHGQKAATGSGVTGISHGISSSKMHSQKGVASDNSTGPSHPVTANYKNISFSQQLNSEQKMSKQLCNVQNMTDELDRLLECIEKAGGFRDACTTTHISLLETLEEGMDSLSEKSRMWQILTEEQHREMQVLLDRTVQVVVRKTHIEGIIRQSTDGKFWGLWNCRKLSSELDLKRQSVSNLSQDLVNQMIELEKHFNALELNLFGKSSGNDVSQALKCKSTPSRYIQSLHAIHKAMVSQLAASQQLSEYLSRQMAVLGIKLSPEKQDNVKKQLFESIGISDHSDYPGFPKTGKVINSSSNKKLFVSSSDKAHNESRRNQLSSLSYHDPETARRRRDSLDRNWANFEAPKTTVKRMLVENQHQNVIASFSSLDKQLSSPRKLEPATSSYPKALPVRNRSGCMDVLKKLNSEDMASSIFKWAGEIPEVSRVQTEETSRLQALQGSNYSAIQNSATLTSDLSSRSSSPTLLDLNIKKENNHSSAGVPWTERGHGDKSKSAIIKDLKPSESQNGYEKSTIQGVQPKLLSSPKKCSEMPISYSKETALPNGGGSSLRPFTHDAVSSTSETPPMRLSSVSASSSPSQSVQALPFTSVEGGSITSAKTVKDTNSPMLQLQPSSSFASPSILHDSFFSSKDPKIKESHSMESSTNSVGQSPKIDPQPTLNKVGSDTPASPASTPLPPQKLESVIDGLKFESVTPSARSSDIPKEALSGSPHALSRTVTLASDVVTNTPSEKNSPAYTLPAATLSDSDGYTGGKNIVDAAVTQEDEMEEEAPEPNSTADLSLGGLAGFGLGSVSSTTASKSNPFGVSVSSATVNTSSSISLPVPSGELFRPASFSFQSLQTSQQSQPASIGATSGAYGSGIPPQQPSSGGFGQPGQIGLGQAALGSVLGSFGQSRQFGAAMPGSGFGGNQSAGGFLNAPTGGGGFASVAPTGGGFAGLGATASGFAAAGAGATGVGFAAAASGGGGFAGAASGGGGFGAFSKQGSSGFSGLRSGAGGGQPSSLFTQIRK*

Click here to download the sequence:
Link to NCBI Protein BLAST