Transcript Information: S_Transcript_406162.p2


Annotated TAIR IDAT5G03340.1
Annotated Gene NameATPase, AAA-type, CDC48 protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:810091-813133 | Reverse length=810
E-Value6E-15
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.87735168907188
Replicate 20.7273447106873
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20.24905287446536
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_406162.p2 GENE.S_Transcript_406162~~S_Transcript_406162.p2 ORF type:5prime_partial len:91 (+),score=-9.84,Vps4_C|PF09336.6|2e-06 S_Transcript_406162:2-274(+)
GACGCCGCCGAGGACAGCGTGCCGTGCATCACGCGGGGGCACTTTGAGGAGTCGATGAAGCACGCGCGGCGCAGCGTCTCGCAGGCCGACCTGCGGCGGTACGAGGCGTTTGCCAACACGCTGCGGCAGAGCCGCGGCATGGGCAGCGAGTTCCGCTTCCAAGACAACCCCGCAGCCGCCGGCGGCGGCGGCGGCGGTGCCACAAATGGCGCGGCGGCACCGGCCGCGTTTGGCGCCGACAACGGCGATGATGACGAAGACCTTTACAGCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_406162.p2 GENE.S_Transcript_406162~~S_Transcript_406162.p2 ORF type:5prime_partial len:91 (+),score=-9.84,Vps4_C|PF09336.6|2e-06 S_Transcript_406162:2-274(+)
DAAEDSVPCITRGHFEESMKHARRSVSQADLRRYEAFANTLRQSRGMGSEFRFQDNPAAAGGGGGGATNGAAAPAAFGADNGDDDEDLYS*

Click here to download the sequence:
Link to NCBI Protein BLAST