Transcript Information: S_Transcript_406558.p1


Annotated TAIR IDAT4G17850.1
Annotated Gene NameBEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT3G02890.1); Has 200 Blast hits to 194 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 61; Fungi - 11; Plants - 116; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:9922990-9923850 | Forward length=187
E-Value2E-08
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.91768969776484
Replicate 21.775166975892
Replicate 30.63595641667588
Condition 2: 8 Hour
Replicate 10.98047771573025
Replicate 21.5428861130846
Replicate 30.98003897034397
Condition 3: 24 Hour
Replicate 11.0043624593377
Replicate 22.0840286506986
Replicate 31.1596342255226


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_406558.p1 GENE.S_Transcript_406558~~S_Transcript_406558.p1 ORF type:internal len:87 (-),score=10.82,PHD|PF00628.25|1.6e-06 S_Transcript_406558:2-259(-)
GAAATATATGTGTGTCTGCAAGACCTTCCCCCTGGTATGGAGCAGATGACTGTTTGTCAAACATGTGGTAGCGAAGGGTATCGGAAACTTCTGATCCACTGTATAAAGTGTCAGATAGTTGCAGTGCATCGATACTGTGTTGATGGCCCTTCTACTATTGATGATGAAGAGATTAATTGGTCTTGTGAAGACTGTGTCCCTAGAAAGCCAAAGCCTACTTTACCATGTAGGAAAAGTCAACGCATGAATGCAACGATA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_406558.p1 GENE.S_Transcript_406558~~S_Transcript_406558.p1 ORF type:internal len:87 (-),score=10.82,PHD|PF00628.25|1.6e-06 S_Transcript_406558:2-259(-)
EIYVCLQDLPPGMEQMTVCQTCGSEGYRKLLIHCIKCQIVAVHRYCVDGPSTIDDEEINWSCEDCVPRKPKPTLPCRKSQRMNATI

Click here to download the sequence:
Link to NCBI Protein BLAST