Transcript Information: S_Transcript_40716.p1


Annotated TAIR IDAT5G52545.1
Annotated Gene Nameunknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; Has 16 Blast hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:21323959-21324198 | Reverse length=79
E-Value4E-05
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 113.040370605238
Replicate 25.956953180529
Replicate 35.7172481859162
Condition 2: 8 Hour
Replicate 18.1036483205105
Replicate 26.4878361055207
Replicate 38.5263390419925
Condition 3: 24 Hour
Replicate 15.4612208726485
Replicate 25.6659528940868
Replicate 35.2966293250744


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_40716.p1 GENE.S_Transcript_40716~~S_Transcript_40716.p1 ORF type:5prime_partial len:100 (+),score=30.76,RRM_5|PF13893.2|1.7e-06,RRM_5|PF13893.2|2.2e+03,RRM_5|PF13893.2|7.3e+03 S_Transcript_40716:3-302(+)
TTTGCTTTTGTCCAGTATAGTACGAAAGAGGAAGCTTTATTGGCCAAGGAGAAGATGCATGGGAGGTTGGCCTGTGGCCGACCTTTGGTTGTACGTCTTGCAAGTGAGAAGTCTGTGGCTGAAGTGGCAGTTAATACACCGAAGGGCTGTGGTGTAGTGAGCCGATCAGCTGGTTCTGGCAGCAGTTCTGGACAAATGAGTCGGAGTGCCAAGATAGCTGCGATAAAGAACAAATTGAAGGCATTGGAAGACGATGGCGGTAGAGCAAAGAAGCAGAAACAGCTTGAGAGCATTTCATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_40716.p1 GENE.S_Transcript_40716~~S_Transcript_40716.p1 ORF type:5prime_partial len:100 (+),score=30.76,RRM_5|PF13893.2|1.7e-06,RRM_5|PF13893.2|2.2e+03,RRM_5|PF13893.2|7.3e+03 S_Transcript_40716:3-302(+)
FAFVQYSTKEEALLAKEKMHGRLACGRPLVVRLASEKSVAEVAVNTPKGCGVVSRSAGSGSSSGQMSRSAKIAAIKNKLKALEDDGGRAKKQKQLESIS*

Click here to download the sequence:
Link to NCBI Protein BLAST