Transcript Information: S_Transcript_407336.p1


Annotated TAIR IDAT3G27960.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:10380513-10382593 | Reverse length=663
E-Value2.7E-125
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.6176722526407
Replicate 23.6168507471336
Replicate 33.144335332286
Condition 2: 8 Hour
Replicate 13.9154815008507
Replicate 25.0611723152168
Replicate 35.5211539698148
Condition 3: 24 Hour
Replicate 12.8649027528648
Replicate 22.6007652628595
Replicate 33.2251138747525


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_407336.p1 GENE.S_Transcript_407336~~S_Transcript_407336.p1 ORF type:3prime_partial len:305 (-),score=50.91,TPR_12|PF13424.2|3.3e+02,TPR_12|PF13424.2|4.2e-15,TPR_12|PF13424.2|1.2e-05,TPR_12|PF13424.2|0.00014,TPR_12|PF13424.2|2.7e-09,TPR_1|PF00515.24|85,TPR_1|PF00515.24|0.0015,TPR_1|PF00515.24|0.0083,TPR_1|PF00515.24|0.00036,TPR_1|PF00515.24|0.0082,TPR_1|PF00515.24|26,TPR_1|PF00515.24|1.4e+02,TPR_2|PF07719.13|3e+02,TPR_2|PF07719.13|0.0013,TPR_2|PF07719.13|0.47,TPR_2|PF07719.13|0.0058,TPR_2|PF07719.13|0.039,TPR_2|PF07719.13|1.4,TPR_2|PF07719.13|1.2e+03,TPR_10|PF13374.2|2.4e+03,TPR_10|PF13374.2|35,TPR_10|PF13374.2|1.4,TPR_10|PF13374.2|0.2,TPR_10|PF13374.2|3.4,TPR_10|PF13374.2|1.9e-05,TPR_10|PF13374.2|6.6,TPR_11|PF13414.2|9.1e+02,TPR_11|PF13414.2|3.2e-08,TPR_11|PF13414.2|1.4e-05,TPR_11|PF13414.2|1.9,TPR_8|PF13181.2|4.8e+02,TPR_8|PF13181.2|0.00082,TPR_8|PF13181.2|0.00025,TPR_8|PF13181.2|0.081,TPR_8|PF13181.2|0.23,TPR_8|PF13181.2|1.1e+03,TPR_8|PF13181.2|5.8e+02,TPR_7|PF13176.2|6.1e+02,TPR_7|PF13176.2|0.05,TPR_7|PF13176.2|0.73,TPR_7|PF13176.2|0.029,TPR_7|PF13176.2|40,TPR_7|PF13176.2|1.4e+02,TPR_7|PF13176.2|34,SNAP|PF14938.2|0.00018,SNAP|PF14938.2|4.3e-06,TPR_6|PF13174.2|9.4e+03,TPR_6|PF13174.2|0.57,TPR_6|PF13174.2|10,TPR_6|PF13174.2|0.35,TPR_6|PF13174.2|4,TPR_6|PF13174.2|8.3e+02,TPR_16|PF13432.2|0.0073,TPR_16|PF13432.2|0.4,TPR_16|PF13432.2|1.1e+02,TPR_16|PF13432.2|5.6e+02,DUF2225|PF09986.5|1.1e-05,DUF2225|PF09986.5|0.087,DUF2225|PF09986.5|1.3e+02,TPR_14|PF13428.2|7.5e+03,TPR_14|PF13428.2|34,TPR_14|PF13428.2|99,TPR_14|PF13428.2|0.33,TPR_14|PF13428.2|1.7e+02,TPR_14|PF13428.2|2.9e+02,TPR_19|PF14559.2|4.5e+03,TPR_19|PF14559.2|0.34,TPR_19|PF14559.2|0.56,TPR_19|PF14559.2|0.046,TPR_19|PF14559.2|35,TPR_19|PF14559.2|1.1e+02 S_Transcript_407336:2-865(-)
ATGGCAATGGTAGCCAATGGTCAGGAGAAAGAGGTGGCTTCTGTTGATTGCAGTATTGGAGATACATACTTGTCTCTCACTCGGTATGATGAGGCTATCTTTGCCTACGAGAAAGCACTCACTAACTTCAAGTCAACAAAAGGAGATAATCATCCGGCTATTGCTTCAGTATATGTCCGCCTTGCTGATTTGTATAACAAGACGGGTAAGCTTAGAGAGTCCAAATCGTACTGTGAAAATGCACTTCGTATCTATAGCAAGCCCATTCCCGGAACTTCTCAAGAGGAGATGGCAAGTGGGTTCACTGATGTTGCTGCCATCTATGAGTCAATGAATGAGCTTGAACAGGCTATCAAGCTGTTACAAAAGGCTCTGAAAATATATGATGACGCACCTGGACAGCAAAGTATAATTGCAGGGATTGAGGCTCAGATGGGGGTCATGTATTATATGCTTGGGAATTATACCGAGGCATACAATTCTTTTAAGAGTGCCATAACAAAACTTCGAGCTAGTGGGGAGAAGAAGTCTGCCTTCTTTGGAATAGCTCTGAATCAAATGGGCCTTGCTTGTATTCAGCGTTATGCCATTAATGAGGCAGTAGAATTGTTTGAAGAAGCCAGGAGTATATTGGAGCAAGAATATGGCCCCTATCATCCTGATACACTTGGTGTATATAGTAATCTTGCTGGAACTTATGACGCAATTGGCAGGTATGAATCATTTTCATATATTTTCCTTACAAGCACTGTATTTGATCTAATTTTGAACGTATATTTATCAATAGTTAGTACATTGGTAGTTAACTTCCACCCTGTTAGTATTTTAGTCAAGTTATATATGCGTATGTATTACATGCCTGCA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_407336.p1 GENE.S_Transcript_407336~~S_Transcript_407336.p1 ORF type:3prime_partial len:305 (-),score=50.91,TPR_12|PF13424.2|3.3e+02,TPR_12|PF13424.2|4.2e-15,TPR_12|PF13424.2|1.2e-05,TPR_12|PF13424.2|0.00014,TPR_12|PF13424.2|2.7e-09,TPR_1|PF00515.24|85,TPR_1|PF00515.24|0.0015,TPR_1|PF00515.24|0.0083,TPR_1|PF00515.24|0.00036,TPR_1|PF00515.24|0.0082,TPR_1|PF00515.24|26,TPR_1|PF00515.24|1.4e+02,TPR_2|PF07719.13|3e+02,TPR_2|PF07719.13|0.0013,TPR_2|PF07719.13|0.47,TPR_2|PF07719.13|0.0058,TPR_2|PF07719.13|0.039,TPR_2|PF07719.13|1.4,TPR_2|PF07719.13|1.2e+03,TPR_10|PF13374.2|2.4e+03,TPR_10|PF13374.2|35,TPR_10|PF13374.2|1.4,TPR_10|PF13374.2|0.2,TPR_10|PF13374.2|3.4,TPR_10|PF13374.2|1.9e-05,TPR_10|PF13374.2|6.6,TPR_11|PF13414.2|9.1e+02,TPR_11|PF13414.2|3.2e-08,TPR_11|PF13414.2|1.4e-05,TPR_11|PF13414.2|1.9,TPR_8|PF13181.2|4.8e+02,TPR_8|PF13181.2|0.00082,TPR_8|PF13181.2|0.00025,TPR_8|PF13181.2|0.081,TPR_8|PF13181.2|0.23,TPR_8|PF13181.2|1.1e+03,TPR_8|PF13181.2|5.8e+02,TPR_7|PF13176.2|6.1e+02,TPR_7|PF13176.2|0.05,TPR_7|PF13176.2|0.73,TPR_7|PF13176.2|0.029,TPR_7|PF13176.2|40,TPR_7|PF13176.2|1.4e+02,TPR_7|PF13176.2|34,SNAP|PF14938.2|0.00018,SNAP|PF14938.2|4.3e-06,TPR_6|PF13174.2|9.4e+03,TPR_6|PF13174.2|0.57,TPR_6|PF13174.2|10,TPR_6|PF13174.2|0.35,TPR_6|PF13174.2|4,TPR_6|PF13174.2|8.3e+02,TPR_16|PF13432.2|0.0073,TPR_16|PF13432.2|0.4,TPR_16|PF13432.2|1.1e+02,TPR_16|PF13432.2|5.6e+02,DUF2225|PF09986.5|1.1e-05,DUF2225|PF09986.5|0.087,DUF2225|PF09986.5|1.3e+02,TPR_14|PF13428.2|7.5e+03,TPR_14|PF13428.2|34,TPR_14|PF13428.2|99,TPR_14|PF13428.2|0.33,TPR_14|PF13428.2|1.7e+02,TPR_14|PF13428.2|2.9e+02,TPR_19|PF14559.2|4.5e+03,TPR_19|PF14559.2|0.34,TPR_19|PF14559.2|0.56,TPR_19|PF14559.2|0.046,TPR_19|PF14559.2|35,TPR_19|PF14559.2|1.1e+02 S_Transcript_407336:2-865(-)
MAMVANGQEKEVASVDCSIGDTYLSLTRYDEAIFAYEKALTNFKSTKGDNHPAIASVYVRLADLYNKTGKLRESKSYCENALRIYSKPIPGTSQEEMASGFTDVAAIYESMNELEQAIKLLQKALKIYDDAPGQQSIIAGIEAQMGVMYYMLGNYTEAYNSFKSAITKLRASGEKKSAFFGIALNQMGLACIQRYAINEAVELFEEARSILEQEYGPYHPDTLGVYSNLAGTYDAIGRYESFSYIFLTSTVFDLILNVYLSIVSTLVVNFHPVSILVKLYMRMYYMPA

Click here to download the sequence:
Link to NCBI Protein BLAST