Transcript Information: S_Transcript_40848.p1


Annotated TAIR IDAT3G62110.1
Annotated Gene NamePectin lyase-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:22997313-22999503 | Reverse length=471
E-Value6E-68
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 123.457309389112
Replicate 224.417316506341
Replicate 322.670715106719
Condition 2: 8 Hour
Replicate 111.294870760853
Replicate 211.495416297093
Replicate 39.5205169144778
Condition 3: 24 Hour
Replicate 149.302088826598
Replicate 248.462933054561
Replicate 340.574593173448


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_40848.p1 GENE.S_Transcript_40848~~S_Transcript_40848.p1 ORF type:complete len:253 (+),score=25.95,Glyco_hydro_28|PF00295.13|2.6e-16 S_Transcript_40848:1896-2654(+)
ATGATCATCGTAAATGTTTTTTCTCACACAATAACCTTACCAGTTACCTGTGAATATGAATCCCCAGATTCTTCAAATGATGTTTGCATTGAAGATTGTTACATTAGCACTGGTGATGATCTGGTTGCAATTAAAAGTGGGTGGGATGAATATGGTATCTCATTTGCTCATCCAAGCACAAACATCAACATCTACAGGCTGAGAGGAGAAACTCAAAGCTCTGGTATAACAATCGGAAGTGAAATGTCTGGAGGAGTGTCAGAAGTTTACATAGAAGACCTCCTTGTTTTTAACACCGAAACAGCTATTACGATACGAACATCGCCTGGACGGGGTGGGTATATCAGAAATGTGTGCATATCAAATGTGTCCATGACGGATGTAACAACAGCCATATGGTTCAATAGTCAATATGGTCAGCATCCAGACAAGCACTATGACCCAAGAGCCTTACCTGTGGTAGAAAAAATTGCTATAAGAGATGTCAGGGGAGACAATGTTAAAGTTGCCGGCTTATTGGAGGGCATAGAAGTGGATGATTTCATGGACGTCTGCCTGTATAACATTACCCTAAGCGTTACTTCAACATTCCCATGGAACTGTTCATATGTTCAAGGATATTCTGAGTTGGTTTCTCCACCATCATGCGAAGCTTTGAGGAAGACAAAGCGTTATACAGATTGCTATCGTGCAGTACCAAGTTGTTGGAAGAGAGAGATGGATCGATCCTTTCCAAGGAATCACCTCCGCCCATTGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_40848.p1 GENE.S_Transcript_40848~~S_Transcript_40848.p1 ORF type:complete len:253 (+),score=25.95,Glyco_hydro_28|PF00295.13|2.6e-16 S_Transcript_40848:1896-2654(+)
MIIVNVFSHTITLPVTCEYESPDSSNDVCIEDCYISTGDDLVAIKSGWDEYGISFAHPSTNINIYRLRGETQSSGITIGSEMSGGVSEVYIEDLLVFNTETAITIRTSPGRGGYIRNVCISNVSMTDVTTAIWFNSQYGQHPDKHYDPRALPVVEKIAIRDVRGDNVKVAGLLEGIEVDDFMDVCLYNITLSVTSTFPWNCSYVQGYSELVSPPSCEALRKTKRYTDCYRAVPSCWKREMDRSFPRNHLRPL*

Click here to download the sequence:
Link to NCBI Protein BLAST