Transcript Information: S_Transcript_40854.p1


Annotated TAIR IDAT3G62110.1
Annotated Gene NamePectin lyase-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:22997313-22999503 | Reverse length=471
E-Value6.8E-156
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.5172322297996
Replicate 213.003895831913
Replicate 312.641213143395
Condition 2: 8 Hour
Replicate 15.1548128912275
Replicate 25.5559226754288
Replicate 35.1525062091511
Condition 3: 24 Hour
Replicate 123.002228311288
Replicate 224.615000652457
Replicate 322.967093415255


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_40854.p1 GENE.S_Transcript_40854~~S_Transcript_40854.p1 ORF type:3prime_partial len:302 (+),score=45.36,Glyco_hydro_28|PF00295.13|5.3e-28,Pectate_lyase_3|PF12708.3|2.3e-13 S_Transcript_40854:1088-1990(+)
ATGAAGATGAATTTGGTTATAGTGATTGTGTGTGTAATTGTCAGTGAATTTGGTTGTGGTCATAGTAGTTATTGTACCACTCCCCAAAGATCAGCACAATTCCGGAAATACAGTGTTTCCATAACTGAATTTGGAGGTGTTGGAGATGGGCTTACCCTTAATACCAAAGCCTTTCATGATGCTATCCACCATCTTACTCCTTTCTCTCACAAGTATGGGGCTCAGCTTATCATCCCTGCTGGCCGCTGGTTGACTGGAAGCTTTGGCCTTATCAGTCATCTCACTTTGTGGCTCCATAGTGATGCTGTCTTACTCGCATCCAAGAACTCAGATGATTGGCCTATTGTGGATCCTTTACCTTCCTATGGGCGAGGCAGGGAGTTGCCTGGTAGGAGATACCAGAGTCTTATTTATGGACACAACTTGACAGACGTCATTATAACAGGTCACAATGGAACTATTGATGGCCAAGGTCATGTTTGGTGGGACTGGTTTCACAACAACACCCTAAGCTATACTCGGCCTCACTTGCTTGAATTCATCAACTCAACTGAGATAATCATCTCAAATCTGACCTTTTTAAACTCCCCATTCTGGAATATCCACCCTGTATATTGCAGCAAGGTGGTCATCCAGAATCTTACCATTCTTGCACCTTATTATTCCCCCAACACAGACGGCATAGATCCAGATTCTTCAAATGATGTTTGCATTGAAGATTGTTACATTAGCACTGGTGATGATCTGGTTGCAATTAAAAGTGGGTGGGATGAATATGGTATCTCATTTGCTCATCCAAGCACAAACATCAACATCTACAGGCTGAGAGGAGAAACTCAAAGCTCTGGTATAACAATCGGAAGTGAAATGTCTGGAGGAGTGTCAGAAGTTTACATAGAAGAC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_40854.p1 GENE.S_Transcript_40854~~S_Transcript_40854.p1 ORF type:3prime_partial len:302 (+),score=45.36,Glyco_hydro_28|PF00295.13|5.3e-28,Pectate_lyase_3|PF12708.3|2.3e-13 S_Transcript_40854:1088-1990(+)
MKMNLVIVIVCVIVSEFGCGHSSYCTTPQRSAQFRKYSVSITEFGGVGDGLTLNTKAFHDAIHHLTPFSHKYGAQLIIPAGRWLTGSFGLISHLTLWLHSDAVLLASKNSDDWPIVDPLPSYGRGRELPGRRYQSLIYGHNLTDVIITGHNGTIDGQGHVWWDWFHNNTLSYTRPHLLEFINSTEIIISNLTFLNSPFWNIHPVYCSKVVIQNLTILAPYYSPNTDGIDPDSSNDVCIEDCYISTGDDLVAIKSGWDEYGISFAHPSTNINIYRLRGETQSSGITIGSEMSGGVSEVYIED

Click here to download the sequence:
Link to NCBI Protein BLAST