Transcript Information: S_Transcript_408788.p1


Annotated TAIR IDAT5G48940.1
Annotated Gene NameLeucine-rich repeat transmembrane protein kinase family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:19839785-19843744 | Forward length=1135
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.4761271407424
Replicate 20.12464852857353
Replicate 30.086830207549909
Condition 2: 8 Hour
Replicate 10.40160810390081
Replicate 20.084263083388801
Replicate 30.16057135672302
Condition 3: 24 Hour
Replicate 10.020569570141802
Replicate 20.042681377733234
Replicate 30.16624699702054


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_408788.p1 GENE.S_Transcript_408788~~S_Transcript_408788.p1 ORF type:complete len:1062 (+),score=181.66,Pkinase|PF00069.21|9.9e-39,LRR_8|PF13855.2|0.001,LRR_8|PF13855.2|0.0015,LRR_8|PF13855.2|0.65,LRR_8|PF13855.2|1.2,LRR_8|PF13855.2|0.27,LRR_8|PF13855.2|1.1e-07,LRR_8|PF13855.2|9.5e-07,LRR_8|PF13855.2|1.3e-05,LRR_8|PF13855.2|0.0051,LRR_8|PF13855.2|3.2e-07,LRR_8|PF13855.2|0.0046,LRR_8|PF13855.2|0.0048,LRR_8|PF13855.2|0.0034,LRR_8|PF13855.2|45,Pkinase_Tyr|PF07714.13|1.1e-36,LRR_4|PF12799.3|45,LRR_4|PF12799.3|0.42,LRR_4|PF12799.3|1.3,LRR_4|PF12799.3|0.015,LRR_4|PF12799.3|2.8,LRR_4|PF12799.3|0.34,LRR_4|PF12799.3|0.0049,LRR_4|PF12799.3|0.0077,LRR_4|PF12799.3|0.024,LRR_4|PF12799.3|0.48,LRR_4|PF12799.3|0.16,LRR_4|PF12799.3|0.036,LRR_4|PF12799.3|0.014,LRR_4|PF12799.3|0.5,LRR_4|PF12799.3|0.07,LRR_4|PF12799.3|1.4,LRR_1|PF00560.29|1.7e+02,LRR_1|PF00560.29|1.1,LRR_1|PF00560.29|1e+02,LRR_1|PF00560.29|8.5e+03,LRR_1|PF00560.29|7e+02,LRR_1|PF00560.29|2.6e+02,LRR_1|PF00560.29|5.1,LRR_1|PF00560.29|1.1e+02,LRR_1|PF00560.29|3.5e+03,LRR_1|PF00560.29|2e+03,LRR_1|PF00560.29|0.71,LRR_1|PF00560.29|4.2e+02,LRR_1|PF00560.29|29,LRR_1|PF00560.29|37,LRR_1|PF00560.29|20,LRR_1|PF00560.29|58,LRR_1|PF00560.29|25,LRR_1|PF00560.29|5.4e+02,LRR_1|PF00560.29|15,LRR_1|PF00560.29|9.1 S_Transcript_408788:95-3280(+)
ATGCCAAAGCCAATGCCAGCACCTATGCCAAGGCAAAGCTTGAAGCCCCACCACAACCACCACTTGAGCCGCCTCCATAACCATAACCATCATCATCTTATCCTTTGCATAACTCTTATTCTCTCTCCATTCTTCACCTCTGCCCTTGACAATAGTAACCATGAAGTTCTGGTCTTACATTCATGGCTTCACAGTTCTTCCCAGCCTCCACCCCCTGCTTTCTCAGACTGGAACTCTTGGGACCAATACCCTTGCAAATGGTCTTTCATAACTTGCTCTTCTGATAACTTTGTTACTGAAATCAACATTGACTCAGTTCAGTTAGCACTTCCTTTTCCTTCAAATATATCCTCCTTTTCCCAACTACAAAAGCTCACCATTTCCAGTTCTAATCTCACTGGTTCTATCCCAGATAGCATTGGGGATTCTACCCAACTCACTTTACTTGATCTTAGCTCAAATAATCTTGTGGGTGGTATCCCCAGTTCCATTGGGAAGCTGATAGACCTACAAGACTTGATTTTAAACTCCAATCAACTCACTGGGAAAATCCCAGCTGAGCTTGGTGGTTGCCTTAGCCTAGAAAACATCTTGATATTTGATAACAACTTGGATGGTGAGCTCCCAGCTGAGCTTGGAAAACTCACAAACCTGCAGTCTTTGAGGGCAGGGGGAAACAAGGACATTTCTGGAGCAATACCAGAAGAGCTTGGGCAATGTCAGAACATGACCGTGCTCGGATTGGCTGACACGAAGATTTCAGGCTCGATTCCAAGCTCATTAGGCAAGCTAAGCAAGCTCCAGACTTTGTCAGTTTACACTACAATGCTCTCAGGAGAGATCCCACCAGAAATAGGTAACTGCTCTGAGCTTGTGAACTTGTATCTTTATCAGAATAGTCTCTCTGGGTCAATCCCAAAAGAACTAGGAAAGTTGCAAAAACTTGAGAAGTTGCTGCTATGGCAGAATAATTTGTCTGGGGCTATCCCAGAAGAGATTGGAAATTGTTCAAGTTTGGAAATTATTGATCTTTCATTAAATTCTCTCTCTGGAAGTATACCTTTATCATTTGGGAAACTGCCATACCTCCAAGAGCTGATGCTAAGCAGTAACAACATATCTGGCTCAATCCCATCTGGTCTTTCCAATGCCACAAATTTAGTGCAATTGCAGGTGGATAATAATCAAATTACAGGCTCAATCCCAGCTGAGTTAGGGAGGTTAAGAGGGTTGCAAGTCCTCTTTGCCTGGCAGAACAAGCTTGAAGGAAGTATCCCTCCTGCACTGTCTAATTGCAGAAGCCTCCAAGCTTTGGATTTGTCACATAACTCACTCACTGGAAGCTTGCCATCAGGTCTATTTCAGCTCCAAAACCTCACAAAACTGTTGCTGATTTCCAATCACATTTCTGGTTCGATCACACCAGAGATTGGGAAATGCAAGTCCCTCATTCGACTTCGTCTTTTTAACAATAGGATCACTGGGGAAATTCCAAAAGAAATTGGTTTCCTTGGTAGTCTTAGTTTCCTTGATATATCTAAAAATCGCCTTTCTGGGTCAATCCCAGATGAGATAAGCAGGTGCAAAGATTTACAGATGCTAAACCTGAGTAACAACACACTCGGGGGCTCCCTTCCCAGTTCACTAACATCATTGAGTAAGCTTCAGGCTCTAGATTTGTCAAAGAATCAGTTCGTGGGTCCACTTCCAGAGAACTTTGGCCAACTAGAGTCACTCAATTCTCTTGTACTTCGAAGGAACTCTTTCTCTGGATCAATTCCATCATCATTGGGAAGCTGTTTGAATCTTCAACTGATAGACTTAAGCAGCAATGAATTTTCAGGGGGCATCCCAGAGGAACTTTTCCAAATCGAAGGTCTTGACATCGCTCTCAATTTAAGCTGCAATATGCTTACTGGAGAGATACCCCCTCAAATTTCTGCCCTTAAGAAACTATCCATACTTGACCTTTCCCACAATAGGCTCGAAGGCAATTTACTGCAGCTCTCGGAGTTGGACAATCTGGTGTCCCTCAATGTCTCCTATAACAATTTCACAGGTTTTTTACCGGACAACAAGCTATTTAGACAGCTATCATCAGCAGAGTTGGAAGGAAACAAAGGGTTGTGTTCACAAAATCATGATTCATGTTTTGTAGGCAATGGTGCAGGACGAGACAAGGCAAACAAAAGGAGATCAGAAAGGCTTAAATTAGCCATTGGCTTGCTTGTAGCTGTGACTATCATACTGGTGATTCTAGGTGCCATGGCAGTTGTTCGAGCAAGGAAAATGGTTAAAAATGACAATAATTCCGAGATTGGGATGGCTGCCTGGCCATGGAAATTCACTCCATTCCAGAAGTTGAACTTTTCCATAGATGAAGTTTTAAAATGCCTGGTGGAGGGTAATATTATAGGAAAGGGATGCTCAGGGATCGTTTACCGTGCAGAAATGGACAATGGGGAAGTGATTGCAGTGAAAAAGCTATGGCCAACAGCACTGGGGGCCAAACATGATATTCAGAGAGACAGATTGAGGGATGATGGGTGTGATTCCTTCTCAGCAGAAGTGAAGACCCTCGGGTCCATTCGCCACAAGAACATCGTCAAGTTCCTAGGTTGCTGTTGGAATAAGAACACAAAGTTGCTCATGTATGACTACATGCCTAATGGAAGCTTAGGAAGTCTCCTACATGAAAGTGGAAGCTGCTTGGACTGGGATTTGAGGTACAAGATTGTCCTTGGAGCAGCTCAAGGATTAGCTTATCTGCATCACGATTGTGTTCCTCCTATAGTTCACAGAGATATCAAGGCCAACAACATTCTTATTGGCCTCGATTTCGAGCCCTACATTGCTGACTTTGGCCTAGCCAAGCTCGTTGATGATGGGGATTTTGCTCGATCATCCAGCACAGTTGCAGGTTCATATGGCTACATAGCACCTGAATACGGATACATGATGAAAATCACAGAAAAGAGTGACGTGTACAGCTATGGTGTTGTCGTGTTAGAATTACTAACAGGGAAGCAACCAATCGACCCAACCATACCCGATGGGCTACACATTGTGGACTGGGTTAGACAGAAAAAAGGCGGAATTGAAGTACTGGACCCAAAGCTACAAGGCCGACCAGAATCAGAAATCGAAGATATGATGCAAACATTAGGGGTGGCATTGTTTGTGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_408788.p1 GENE.S_Transcript_408788~~S_Transcript_408788.p1 ORF type:complete len:1062 (+),score=181.66,Pkinase|PF00069.21|9.9e-39,LRR_8|PF13855.2|0.001,LRR_8|PF13855.2|0.0015,LRR_8|PF13855.2|0.65,LRR_8|PF13855.2|1.2,LRR_8|PF13855.2|0.27,LRR_8|PF13855.2|1.1e-07,LRR_8|PF13855.2|9.5e-07,LRR_8|PF13855.2|1.3e-05,LRR_8|PF13855.2|0.0051,LRR_8|PF13855.2|3.2e-07,LRR_8|PF13855.2|0.0046,LRR_8|PF13855.2|0.0048,LRR_8|PF13855.2|0.0034,LRR_8|PF13855.2|45,Pkinase_Tyr|PF07714.13|1.1e-36,LRR_4|PF12799.3|45,LRR_4|PF12799.3|0.42,LRR_4|PF12799.3|1.3,LRR_4|PF12799.3|0.015,LRR_4|PF12799.3|2.8,LRR_4|PF12799.3|0.34,LRR_4|PF12799.3|0.0049,LRR_4|PF12799.3|0.0077,LRR_4|PF12799.3|0.024,LRR_4|PF12799.3|0.48,LRR_4|PF12799.3|0.16,LRR_4|PF12799.3|0.036,LRR_4|PF12799.3|0.014,LRR_4|PF12799.3|0.5,LRR_4|PF12799.3|0.07,LRR_4|PF12799.3|1.4,LRR_1|PF00560.29|1.7e+02,LRR_1|PF00560.29|1.1,LRR_1|PF00560.29|1e+02,LRR_1|PF00560.29|8.5e+03,LRR_1|PF00560.29|7e+02,LRR_1|PF00560.29|2.6e+02,LRR_1|PF00560.29|5.1,LRR_1|PF00560.29|1.1e+02,LRR_1|PF00560.29|3.5e+03,LRR_1|PF00560.29|2e+03,LRR_1|PF00560.29|0.71,LRR_1|PF00560.29|4.2e+02,LRR_1|PF00560.29|29,LRR_1|PF00560.29|37,LRR_1|PF00560.29|20,LRR_1|PF00560.29|58,LRR_1|PF00560.29|25,LRR_1|PF00560.29|5.4e+02,LRR_1|PF00560.29|15,LRR_1|PF00560.29|9.1 S_Transcript_408788:95-3280(+)
MPKPMPAPMPRQSLKPHHNHHLSRLHNHNHHHLILCITLILSPFFTSALDNSNHEVLVLHSWLHSSSQPPPPAFSDWNSWDQYPCKWSFITCSSDNFVTEINIDSVQLALPFPSNISSFSQLQKLTISSSNLTGSIPDSIGDSTQLTLLDLSSNNLVGGIPSSIGKLIDLQDLILNSNQLTGKIPAELGGCLSLENILIFDNNLDGELPAELGKLTNLQSLRAGGNKDISGAIPEELGQCQNMTVLGLADTKISGSIPSSLGKLSKLQTLSVYTTMLSGEIPPEIGNCSELVNLYLYQNSLSGSIPKELGKLQKLEKLLLWQNNLSGAIPEEIGNCSSLEIIDLSLNSLSGSIPLSFGKLPYLQELMLSSNNISGSIPSGLSNATNLVQLQVDNNQITGSIPAELGRLRGLQVLFAWQNKLEGSIPPALSNCRSLQALDLSHNSLTGSLPSGLFQLQNLTKLLLISNHISGSITPEIGKCKSLIRLRLFNNRITGEIPKEIGFLGSLSFLDISKNRLSGSIPDEISRCKDLQMLNLSNNTLGGSLPSSLTSLSKLQALDLSKNQFVGPLPENFGQLESLNSLVLRRNSFSGSIPSSLGSCLNLQLIDLSSNEFSGGIPEELFQIEGLDIALNLSCNMLTGEIPPQISALKKLSILDLSHNRLEGNLLQLSELDNLVSLNVSYNNFTGFLPDNKLFRQLSSAELEGNKGLCSQNHDSCFVGNGAGRDKANKRRSERLKLAIGLLVAVTIILVILGAMAVVRARKMVKNDNNSEIGMAAWPWKFTPFQKLNFSIDEVLKCLVEGNIIGKGCSGIVYRAEMDNGEVIAVKKLWPTALGAKHDIQRDRLRDDGCDSFSAEVKTLGSIRHKNIVKFLGCCWNKNTKLLMYDYMPNGSLGSLLHESGSCLDWDLRYKIVLGAAQGLAYLHHDCVPPIVHRDIKANNILIGLDFEPYIADFGLAKLVDDGDFARSSSTVAGSYGYIAPEYGYMMKITEKSDVYSYGVVVLELLTGKQPIDPTIPDGLHIVDWVRQKKGGIEVLDPKLQGRPESEIEDMMQTLGVALFV*

Click here to download the sequence:
Link to NCBI Protein BLAST