Transcript Information: S_Transcript_409879.p2


Annotated TAIR IDAT5G18880.1
Annotated Gene NameRNA-directed DNA polymerase (reverse transcriptase)-related family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:6300535-6301422 | Reverse length=295
E-Value2E-14
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.63364288655192
Replicate 20
Replicate 30.10977819097381
Condition 2: 8 Hour
Replicate 10.25387369425158
Replicate 20.53266306285063
Replicate 30.76128027160648
Condition 3: 24 Hour
Replicate 10.13002906839639
Replicate 20.4047109210062
Replicate 30.30026243339424


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_409879.p2 GENE.S_Transcript_409879~~S_Transcript_409879.p2 ORF type:complete len:168 (+),score=24.99,zf-RVT|PF13966.2|4.5e-19 S_Transcript_409879:3866-4369(+)
ATGAATATATGGGAAAAGGATGTGATATGGAGAAGATGGGAAATAGGCAAGTACAACACTAGTGCAGCCTATGACTTCTTCCAAGAGAGACAACCTACATTCAAGGATGCAAAGTTGGTATGGGAGGCCATGGCAATACCTAGACACTACTATATTTTGCACCTAGCAATGAAAAGGAAGCTGGCCACAGTGGATAACTTACAGAAGAGAGGGTGTGTGATGGTGAACAGGTATGTCTTGTGCTGCCAGGACAATGAAGACCACAGACATTTGTTTTTTAACTGCATGTACAGCAGGGAGGTATGGAGATACATGAAGGCATGGATGAAGCTACAATCACCTATGAGGAGCCTACCATATAAAGCAAAGTGCTTCAGGAAACACCACAAGGGGAAGAGTAAGAGAGTTAAACTGCGTAGAGCTATGCTAGCTGCCACAGTTTACATGATATGGAAGGAACGGAATAATAGGGTGTTCCAGGGACAGATGCAAAGCCCTCCTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_409879.p2 GENE.S_Transcript_409879~~S_Transcript_409879.p2 ORF type:complete len:168 (+),score=24.99,zf-RVT|PF13966.2|4.5e-19 S_Transcript_409879:3866-4369(+)
MNIWEKDVIWRRWEIGKYNTSAAYDFFQERQPTFKDAKLVWEAMAIPRHYYILHLAMKRKLATVDNLQKRGCVMVNRYVLCCQDNEDHRHLFFNCMYSREVWRYMKAWMKLQSPMRSLPYKAKCFRKHHKGKSKRVKLRRAMLAATVYMIWKERNNRVFQGQMQSPP*

Click here to download the sequence:
Link to NCBI Protein BLAST