Transcript Information: S_Transcript_41145.p1


Annotated TAIR IDAT3G11964.1
Annotated Gene NameRNA binding;RNA binding
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:3793957-3806626 | Reverse length=1896
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.4281929567599
Replicate 24.0830093799464
Replicate 34.5473852287406
Condition 2: 8 Hour
Replicate 14.9302522369648
Replicate 24.5579109529591
Replicate 34.9631627592049
Condition 3: 24 Hour
Replicate 13.7307846049285
Replicate 23.2483552012228
Replicate 34.00283955688


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_41145.p1 GENE.S_Transcript_41145~~S_Transcript_41145.p1 ORF type:3prime_partial len:1821 (+),score=422.76,S1|PF00575.19|71,S1|PF00575.19|15,S1|PF00575.19|1.2e-06,S1|PF00575.19|0.0022,S1|PF00575.19|1.6,S1|PF00575.19|6.3e-05,S1|PF00575.19|0.15,S1|PF00575.19|7.6e+03,S1|PF00575.19|0.0038,S1|PF00575.19|1.7,S1|PF00575.19|7e-07,S1|PF00575.19|0.022,S1|PF00575.19|5.7e-18,Suf|PF05843.10|1.2e+04,Suf|PF05843.10|2.5e+03,Suf|PF05843.10|0.0029,Suf|PF05843.10|7.4e-08 S_Transcript_41145:148-5607(+)
ATGGCGGCGATATCGAACAACAAGAAAAGAAAGTCAAGAGACAACAAACCTTCATCAAATTCTTCCAACGATAATAACAACACTAACGAATCCAATTCACAGTCTCTTCAATTCGACGACGATGTTCCTGACTTCCCTAGAGGAGGGGGAAGTAAGTTGAGTCGAGCAGAGAGACAGGAACTCAGAGAAGAAGTTGATATTGAGTTCGATGCTCAAGAGAGATATTCGAAGAGGAAGAAAGGTAGAGGTTCCAAAATGAATGGAAAATCAACGAGTGAAGATGATTTTGGTTCGCTCTTCGGGGAGGGGATTACAGGCAAGCTACCGAGATTTGCTAATAAGATTACTTTGAAGAACATTTCTCCTGGAATGAAGTTGTGGGGAGTGATTTCAGAGGTTAATGAGAAGGATCTTGCTGTTAGTCTTCCTGGGGGCTTACGAGGATTAGTTCGTGCTACTGAAGCGGTGGAGCCTGTTGTACTAGATTCTATCCAGGATGTAGAGGGCCATTTACTCTCTAAGTTATTTTATGTCGGGCAGCTTGTATCTTGTATTGTGTTGCAAGTGGATGATGATAAAAAGGAGACAGGAAAAAGGAAGGTTTGGCTTTCTTTGCGTCTCTCCCTATTGCACAAGGGCTACAACTTGGATGCTGTTCAAGAAGGGATGGTTTTGACTGCTTTTGTGAAAAGCATTGAAGATCATGGTTACATTCTTCATTTTGGATTGCCTTCTTTTACTGGATTTTCGCCAAAGAAAACCGAGGAAGACACTAGGGAGGTGATTGTTGGTCAGCTTGTGCAGGGGGTTGTCAGGAGTATTGATAAAGCTCGGAAAGTTGTCCATTTGTCTTCTGACGCTGCTATGGTGTCTAAATGCTTGACTAAGGACCTTAAGGGTATCTCGCTTGATCTTCTTGTTCCAGGCATGATGGTTAATGCTCGAATACAATCCACACTTGAAAATGGGGTCATGTTATCATTCCTAACTTATTTCACTGGAACTGCTGATATATTTCACTTGGAAAGCGCACGTGTTGCAGCTGACTGGAAAAAACAATATGACAAAAATAAAAAGGTCAATGCTCGCATCCTCTTCATTGATCCATCAACCAGGGCCGTTGGTTTGACCATGAATCCTCACCTCCTTCTCAACAAGTCTCCTCCTTCGGCCAGTGCATTTGAAGGTGCAGTTTTTACTCATGCAGATGTTAAGCCTGGGATGATAGTGAAGGCTAAAGTCGTTTCTCTCATAAGTCTAGGTGCTATTGTGCAATTTCCTGGTGGCGTCAAGGCACTCTGTCCTTTGCAACATATGTCTGAATTTGATATTGAGAAGCCTCGTAAAAAGTTTAAGGTTGGAGCTGAGTTAGTTTTTCGTGTGCTGGGTTGCAAATCAAAGAGAATAACCGTGACACATAAGAAAACACTTGTGAAATCAAAACTTAGCATTCTTAGTTCGTATGCTGATGCCGTAGAAGGACTAATAACGCATGGCTGGATTACGAGTATTGAGAATCGTGGATGTTTTGTAAAATTTTATAATGGAGTTCAAGGACTTGCTCCTAGATCTGAACTTGGTTTAGAACCAGGATGCAGCACAAGTTCAAGATATCATGTTGGACAAGTAGTTAAATGCAGAGTAACAAGTTCAGCTTCACGCCATATCAATCTCAGTTTCATAATCTCTCCAACAAAGGTTTCTGAAGATGACATGGTGAAGTTGGGTAATATTGTTTCTGGAATTGTTGAGTTGGTTACGCCCAATGAAGTATTTCTACATGTAAATGTAAAGGGAAACATGAAGGGTACTATATTTGTAGAGCATCTTGCCGATCACCAGGGGCATGTTGCTCAGCTGAAGTCTGTGTTGAAGCCAGGGCATGAACTTTCTCAGCTGTTGGTTCTAGATATTGAAGGAAACAACTTAATACTCAGTGCAAAATATTCTCTTGTTCATGCCCAACCACAGCTTCCTGGTAATGCTACCCAGATTCGTACAAACACTGTTATCCACGGATATGTATGTAACTTGATTGAAACTGGCTGTTTTGTACGGTTTCTTGGACGTTTGACTGGTTTCTCTCCAAGAAAAAAGGCTCTGGATGATAAAACCACTGATATTTCTGAATCCTTTTACATTGGACAATCTGTTTGCAGCAATGTTCTAGATGTTAATGAAGAAACTGGTCGAGTGACATTGTCATTGAAGCAGTCTACTTGTTCATCCACAGATACTTCTTTCCTCCAGTCATATTTCTTAACAGAGGAGAAGATTGCGAAGCTCCAAATCTCTGATTCAGGTTCTAGTGGCTCTGGGATTGGTTGGGTCGAAAATTTCACTATTGGATGTGTTGTTGAGGGAAGAATTCATGAGGTAAAGGATTTTGGGGTGGTTGTTAGCTTTGAGAAATACGCTGATGTTTTTGGATTTATTACCCAGTATCAGTTGGGTGGGAAAACCCTTGAAACTGGCGCTCCAATTCAAGCTATAGTTCTCGATATTGCTAAGTCAGAGCGCTTGGTTGATCTTTCTTTGAAGCCTGAATTTGTTAAACAAGCTGAAAAAAACATTTCCAAAACTCCAGTGGCTAAGAAGAAACGCAAAAGAGAAGCTAGGGAATTGAAGTTGAATGAAACAGTGAATGCAATAGTAGAGGTAGTCAAAGAGGATTACTTGGTAGTTTCCTTACCAGAGTATAATTTTGCTATTGGATACATAGCTGCATCTGACTATAATACTCAAAGGTTACGTCGGAAGCAATACTCTAACGGTGAAGCTCTTGGTGCTACTGTCATGACACTCCCAAGTGATGCAACAACTGGACGATTACTGCTGCTTGAATCTTTTACCCAGGCCGCTGACACTTCAAATTCAAAGAAGGCGAAAAAGAGGTCTGGATATGATGTTGGGTCTGTGGTTCAGGCAGAGGTCACAGATATTAAACCTCTTGAGCTGCGACTTAAGTTTGGGATTGGATTCCGTGGACGAGTCCACATTACAGAGGCTGAGAATGTTGTTGAAAACCCCTTCTCAATTTACAAAGTGGGACAGGTATTGACAGCTAAGATTGTTGCAAAGTTTGTGGCACCAGAAAACAGTAAAAAAGGCGGCTTGTGGGAGTTGTCTCTCAAACCATCACTGTCAGGTTCAACTTTGATGGGAAAGAGGCAAAGTGATCAAGATTTTGACTTTTCAGTTGGGCAGCAAGTTAGTGGTTATGTCTGCAAAGTGGATAATGAGTGGATCTGGATAGCAATTTCTTTGCAAGTGAGGGCTCAGCTTTTCATCCTTGACACTTCATGTGATCCTGATGAACTTGAGAAATTCCAGAAGCGTTTCAGGGTGGGGGAGAGAGTCTCTGGGTATATCATAAGCATCAATAAAGAAAAGAAGACTCTGCGATTGATTTCCCGTCCATTTTCTGATGTCGTCAATGGAGTAGATGTAGGATTAGTCAAGGAACCTAATATGAGCAGTGATACGTCAGATGAGAAGGGACTTTCTTATGTTCATAAAGGCGATGTTCTTGGTGGCAGGGTGTCGAAGATCCTTCCAGGTGTTGGTGGCATGTTTGTGCAGATAGGCCCTCATTTGTATGGGAAGGTTCACTACACTGAACTCACTGAGTCATTTGTTCCCGACCCTGTATCTGATTATCATGAAGGTCAGTTTGTTAAGTGCAAGGTCCTAGAGATGAGAAACTCAAGCAAGGGCACTGTCCAAATTGATTTGTCTTTGCGCACATCCTTTGAATGCCTTGATGCCAGGGATTCTTCTGACAACCGCATTGAGAAGATTGAAGCGCTTCAGCCTGATATGATGGTAAAGGGTTATGTAAAGAATGTTACCCCTAAAGGGTGCTTCATTATGCTTTCTAGGAGCATTGATGCACAAATTAAGCTAGCTAACTTGTCTGATGGATTTGTTGAAGATCCGGAAAAGGAATTTCCTCTTGGTAGACTTGTAACTGGGAAAGTTATATCTGTGGAACCTCTTTCAAAACGTGTTGAAGTGACTTTGAAGGCAGCTAATAAGAACAGCATCCTCAAATCTGATTCCAGTGATTTAAGTAGTTTGCATGTTGGGGATGTTGTAGAAGGCAGAGTTAAGCGTGTTGAGTCATTTGGTCTATTTATCGTGATTGATACTACAAACTTGGTTGGATTGTGCCATGTCTCAGAGATTTCAGATGAGCGTATTGAGAATATTGATGAGAAATTCAGAGCCGGTGACAGAGTTACTGCAAAAATATTGAAAGTTGATGTGGAGAGACATAGAATTTCACTTGGAATGAAGGCATCTTATTTGAGGGATGGTGATGATGAAGTTAGCATTTCATCACAAAATTCTGATGGAGAAACTGAGCTTGATTTGGTTGTCGATAATCTATCAGAGGGTCCTATGCCTCAAAGTTCATGTTCTGATTCTGAATCTGAGCATGAGGATGGATCAGCTCTTATCCAAGTAGAATCAAGGGCTTCTGTCCCACCCCTTGATGTTATTCTTGATGATATGGAGGAGGATGATACTATGAATGGTGAACTTCACAAAAAGGAAAATGAAGTTGATGCTGTAGAACCTATGGATGAGAAGAGCAAGAGAAAAGAAAAGAAGAAGGCAAAGGAAGAGAAGGAGCTTGAAATCAGGGCTGCTGAACAGCGTTTGCTGGAGAGAGATGTGCCGAGAACTACTGATGAGTTTGAGAAAGCAGTTAGAAGCTCCCCAAACAGTAGCTTTGTCTGGATAAAATACATGCAATTTATGCTTTCTATGGCTGATGTTGAGGGAGCCCGTTCAGTTGCTGAAAGGGCTTTGAAAACCATCAATATAACCTATGAAACAGAGAAGCTGAACATTTGGGTAGCATATCTTAATTTGGAGAATCAATATGGTAATCCTCGCGAGGAAGCCGTAACTGGACTATTCCAAAGGGCACTGCAGTTTTGTGATCCCATGAAGTTGCATTTGGAACTCTTAGGATTGTATGAGAGGACTGAGCAACAAAAGTTGGCTGATGTGCTTCTTGTTAAAATGTGTAAAAAGTTCAAAAATTCATGTGAGGTATGGCTGAGACGAATTCAGTGGCTCTTAAAGCAAAAACCTGAGGGAGTTGATGAAGATGTGAGACGTGCTCTGTTATGTCTTCCTCAATACGAACATATAAAATTTCTTTCACAAGTTGCAATTCTGGAGTTCAAAAGCGGTGTTCCTGATAAAGGGCGCTCGATGTTTGAGAAAATGTTACGTGAATACCCTAAGAGGAGAGATTTGTGGAGTGTATATCTCGATCAGGAAATCAGGCTTGGGGACATGGACTTAATCCGCGCATTGTTCGAGAGAGCAACTAGTTTAAGTCTTCCAGCAAAAAAGATGAAGTTCTTGTTCAAGAAGTACCTCAATTATGAAAAGTCACTTGGTGACAAAGAGCGGATTCAACATGTGATCCAAAAGGCCAAT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_41145.p1 GENE.S_Transcript_41145~~S_Transcript_41145.p1 ORF type:3prime_partial len:1821 (+),score=422.76,S1|PF00575.19|71,S1|PF00575.19|15,S1|PF00575.19|1.2e-06,S1|PF00575.19|0.0022,S1|PF00575.19|1.6,S1|PF00575.19|6.3e-05,S1|PF00575.19|0.15,S1|PF00575.19|7.6e+03,S1|PF00575.19|0.0038,S1|PF00575.19|1.7,S1|PF00575.19|7e-07,S1|PF00575.19|0.022,S1|PF00575.19|5.7e-18,Suf|PF05843.10|1.2e+04,Suf|PF05843.10|2.5e+03,Suf|PF05843.10|0.0029,Suf|PF05843.10|7.4e-08 S_Transcript_41145:148-5607(+)
MAAISNNKKRKSRDNKPSSNSSNDNNNTNESNSQSLQFDDDVPDFPRGGGSKLSRAERQELREEVDIEFDAQERYSKRKKGRGSKMNGKSTSEDDFGSLFGEGITGKLPRFANKITLKNISPGMKLWGVISEVNEKDLAVSLPGGLRGLVRATEAVEPVVLDSIQDVEGHLLSKLFYVGQLVSCIVLQVDDDKKETGKRKVWLSLRLSLLHKGYNLDAVQEGMVLTAFVKSIEDHGYILHFGLPSFTGFSPKKTEEDTREVIVGQLVQGVVRSIDKARKVVHLSSDAAMVSKCLTKDLKGISLDLLVPGMMVNARIQSTLENGVMLSFLTYFTGTADIFHLESARVAADWKKQYDKNKKVNARILFIDPSTRAVGLTMNPHLLLNKSPPSASAFEGAVFTHADVKPGMIVKAKVVSLISLGAIVQFPGGVKALCPLQHMSEFDIEKPRKKFKVGAELVFRVLGCKSKRITVTHKKTLVKSKLSILSSYADAVEGLITHGWITSIENRGCFVKFYNGVQGLAPRSELGLEPGCSTSSRYHVGQVVKCRVTSSASRHINLSFIISPTKVSEDDMVKLGNIVSGIVELVTPNEVFLHVNVKGNMKGTIFVEHLADHQGHVAQLKSVLKPGHELSQLLVLDIEGNNLILSAKYSLVHAQPQLPGNATQIRTNTVIHGYVCNLIETGCFVRFLGRLTGFSPRKKALDDKTTDISESFYIGQSVCSNVLDVNEETGRVTLSLKQSTCSSTDTSFLQSYFLTEEKIAKLQISDSGSSGSGIGWVENFTIGCVVEGRIHEVKDFGVVVSFEKYADVFGFITQYQLGGKTLETGAPIQAIVLDIAKSERLVDLSLKPEFVKQAEKNISKTPVAKKKRKREARELKLNETVNAIVEVVKEDYLVVSLPEYNFAIGYIAASDYNTQRLRRKQYSNGEALGATVMTLPSDATTGRLLLLESFTQAADTSNSKKAKKRSGYDVGSVVQAEVTDIKPLELRLKFGIGFRGRVHITEAENVVENPFSIYKVGQVLTAKIVAKFVAPENSKKGGLWELSLKPSLSGSTLMGKRQSDQDFDFSVGQQVSGYVCKVDNEWIWIAISLQVRAQLFILDTSCDPDELEKFQKRFRVGERVSGYIISINKEKKTLRLISRPFSDVVNGVDVGLVKEPNMSSDTSDEKGLSYVHKGDVLGGRVSKILPGVGGMFVQIGPHLYGKVHYTELTESFVPDPVSDYHEGQFVKCKVLEMRNSSKGTVQIDLSLRTSFECLDARDSSDNRIEKIEALQPDMMVKGYVKNVTPKGCFIMLSRSIDAQIKLANLSDGFVEDPEKEFPLGRLVTGKVISVEPLSKRVEVTLKAANKNSILKSDSSDLSSLHVGDVVEGRVKRVESFGLFIVIDTTNLVGLCHVSEISDERIENIDEKFRAGDRVTAKILKVDVERHRISLGMKASYLRDGDDEVSISSQNSDGETELDLVVDNLSEGPMPQSSCSDSESEHEDGSALIQVESRASVPPLDVILDDMEEDDTMNGELHKKENEVDAVEPMDEKSKRKEKKKAKEEKELEIRAAEQRLLERDVPRTTDEFEKAVRSSPNSSFVWIKYMQFMLSMADVEGARSVAERALKTINITYETEKLNIWVAYLNLENQYGNPREEAVTGLFQRALQFCDPMKLHLELLGLYERTEQQKLADVLLVKMCKKFKNSCEVWLRRIQWLLKQKPEGVDEDVRRALLCLPQYEHIKFLSQVAILEFKSGVPDKGRSMFEKMLREYPKRRDLWSVYLDQEIRLGDMDLIRALFERATSLSLPAKKMKFLFKKYLNYEKSLGDKERIQHVIQKAN

Click here to download the sequence:
Link to NCBI Protein BLAST