Transcript Information: S_Transcript_41147.p1


Annotated TAIR IDAT3G11964.1
Annotated Gene NameRNA binding;RNA binding
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:3793957-3806626 | Reverse length=1896
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 17.838839986463
Replicate 28.4874672616435
Replicate 39.5693441943211
Condition 2: 8 Hour
Replicate 111.031530525687
Replicate 211.525957658727
Replicate 310.791985737113
Condition 3: 24 Hour
Replicate 17.510609837437
Replicate 26.5330693747333
Replicate 37.4687919753095


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_41147.p1 GENE.S_Transcript_41147~~S_Transcript_41147.p1 ORF type:complete len:1908 (+),score=453.75,S1|PF00575.19|75,S1|PF00575.19|14,S1|PF00575.19|1.6,S1|PF00575.19|1.3e-06,S1|PF00575.19|0.0023,S1|PF00575.19|5.5,S1|PF00575.19|7e-06,S1|PF00575.19|11,S1|PF00575.19|9.4e+03,S1|PF00575.19|0.004,S1|PF00575.19|1.8,S1|PF00575.19|7.3e-07,S1|PF00575.19|0.023,S1|PF00575.19|6e-18,Suf|PF05843.10|1.3e+04,Suf|PF05843.10|0.0029,Suf|PF05843.10|9.9e-09 S_Transcript_41147:148-5871(+)
ATGGCGGCGATATCGAACAACAAGAAAAGAAAGTCAAGAGACAACAAACCTTCATCAAATTCTTCCAACGATAATAACAACACTAACGAATCCAATTCACAGTCTCTTCAATTCGACGACGATGTTCCTGACTTCCCTAGAGGAGGGGGAAGTAAGTTGAGTCGAGCAGAGAGACAGGAACTCAGAGAAGAAGTTGATATTGAGTTCGATGCTCAAGAGAGATATTCGAAGAGGAAGAAAGGTAGAGGTTCCAAAATGAATGGAAAATCAACGAGTGAAGATGATTTTGGTTCGCTCTTCGGGGAGGGGATTACAGGCAAGCTACCGAGATTTGCTAATAAGATTACTTTGAAGAACATTTCTCCTGGAATGAAGTTGTGGGGAGTGATTTCAGAGGTTAATGAGAAGGATCTTGCTGTTAGTCTTCCTGGGGGCTTACGAGGATTAGTTCGTGCTACTGAAGCGGTGGAGCCTGTTGTACTAGATTCTATCCAGGATGTAGAGGGCCATTTACTCTCTAAGTTATTTTATGTCGGGCAGCTTGTATCTTGTATTGTGTTGCAAGTGGATGATGATAAAAAGGAGACAGGAAAAAGGAAGGTTTGGCTTTCTTTGCGTCTCTCCCTATTGCACAAGGGCTACAACTTGGATGCTGTTCAAGAAGGGATGGTTTTGACTGCTTTTGTGAAAAGCATTGAAGATCATGGTTACATTCTTCATTTTGGATTGCCTTCTTTTACTGGATTTTCGCCAAAGAAAACCGAGGAAGACACTAGGGAGGTGATTGTTGGTCAGCTTGTGCAGGGGGTTGTCAGGAGTATTGATAAAGCTCGGAAAGTTGTCCATTTGTCTTCTGACGCTGCTATGGTGTCTAAATGCTTGACTAAGGACCTTAAGGGTATCTCGCTTGATCTTCTTGTTCCAGGCATGATGGTTAATGCTCGAATACAATCCACACTTGAAAATGGGGTCATGTTATCATTCCTAACTTATTTCACTGGAACTGCTGATATATTTCACTTGGAAAGCGCACGTGTTGCAGCTGACTGGAAAAAACAATATGACAAAAATAAAAAGGTCAATGCTCGCATCCTCTTCATTGATCCATCAACCAGGGCCGTTGGTTTGACCATGAATCCTCACCTCCTTCTCAACAAGTCTCCTCCTTCGCTTGTGAAGACAGGGGAGATTTATGATCACTCAAAAATTATTAGAGTAGATAGGGGCTTTGGCCTTTTGCTTGAAATCCCATCTCTTCCATCACCCACTCCTGCATACGTGCCAGTTTGTGATGTAGCCGATGAAGAAGTCAGTAAGCTTGAGAGGAAATTCAAGGAAGGGAGCGACGTTCGAGCAAGAGTACTTGGGTTTAGGCACTTGGACGGACTTGCTATGTGTGTTCTTAAGGCCAGTGCATTTGAAGGTGCAGTTTTTACTCATGCAGATGTTAAGCCTGGGATGATAGTGAAGGCTAAAGTCGTTTCTCTCATAAGTCTAGGTGCTATTGTGCAATTTCCTGGTGGCGTCAAGGCACTCTGTCCTTTGCAACATATGTCTGAATTTGATATTGAGAAGCCTCGTAAAAAGTTTAAGGTTGGAGCTGAGTTAGTTTTTCGTGTGCTGGGTTGCAAATCAAAGAGAATAACCGTGACACATAAGAAAACACTTGTGAAATCAAAACTTAGCATTCTTAGTTCGTATGCTGATGCCGTAGAAGGACTAATAACGCATGGCTGGATTACGAGTATTGAGAATCGTGGATGTTTTGTAAAATTTTATAATGGAGTTCAAGGACTTGCTCCTAGATCTGAACTTGGTTTAGAACCAGGATGCAGCACAAGTTCAAGATATCATGTTGGACAAGTAGTTAAATGCAGAGTAACAAGTTCAGCTTCACGCCATATCAATCTCAGTTTCATAATCTCTCCAACAAAGGTTTCTGAAGATGACATGGTGAAATTGGGTAGCATTGTTTCTGGAGTTGTTGAGTTGGTTACGCCCAGTGAAGTATTTTTACATGTAAATGTAAAGGGAAACATGAAGGGTACTATATTTGTAGAGCATCTTGCCGATCACCAGGGGCATGTTGCTCAGCTGAAGTCTGTGTTGAAGCCAGGGCATGAACTTTCTCAGCTGTTGGTTCTAGATATTGAAGGAAACAACTTAATACTCAGTGCAAAATATTCTCTTGTTCATGCCCAACCACAGCTTCCTGGTAATGCTACCCAGATTCGTACAAACACTGTTATCCACGGATATGTATGTAACTTGATTGAAACTGGCTGTTTTGTACGGTTTCTTGGACGTTTGACTGGTTTCTCTCCAAGAAAGAAGTCTCTGGATGATAGAAACATTGATATTTCTGAAGCCTTTTATATTGGACAATCTGTTCGCAGCAGTGTTCTAGATGTTAATGAAGAAACTGGTCGAGTGACATTGTCATTGAAGCAGTCTACTTGTTCATCCACAGATACTTCTTTCCTCCAGTCATATTTCTTAACAGAGGAGAAGATTGCTAAGCTTCAAATCTCTGATTCAGGTTCAAGTGGCTCTGGGATTGGTTGGGTTGAAAATTTCACTATTGGATGTGCTGTTGAGGGAAGAATTCATGAGGCAAAGGATTTTGGGGTGGTTGTTAGCTTTGAGAAATATGCTGATGTTTTTGGTTTCATTACCCATTATCAGTTGGGTGGGAAAACCTTTGAAACTGGCTCTCCAATTCAAGCTATAGTTCTCGATATTGCTAAGTCAGAGCGCTTGGTTGATCTTTCTTTGAAGCCTGAATTTGTTAAACAAGCTGAAAAAAACATTTCCAAAACTCCAGTGGCTAAGAAGAAACGCAAAAGAGAAGCTAGGGAATTGAAGTTGAATGAAACAGTGAATGCAATAGTAGAGGTAGTCAAAGAGGATTACTTGGTAGTTTCCTTACCAGAGTATAATTTTGCTATTGGATACATAGCTGCATCTGACTATAATACTCAAAGGTTACGTCGGAAGCAATACTCTAACGGTGAAGCTCTTGGTGCTACTGTCATGACACTCCCAAGTGATGCAACAACTGGACGATTACTGCTGCTTGAATCTTTTACCCAGGCCGCTGACACTTCAAATTCAAAGAAGGCGAAAAAGAGGTCTGGATATGATGTTGGGTCTGTGGTTCAGGCAGAGGTCACAGATATTAAACCTCTTGAGCTGCGACTTAAGTTTGGGATTGGATTCCGTGGACGAGTCCACATTACAGAGGCTGAGAATGTTGTTGAAAACCCCTTCTCAATTTACAAAGTGGGACAGGTATTGACAGCTAAGATTGTTGCAAAGTTTGTGGCACCAGAAAACAGTAAAAAAGGCGGCTTGTGGGAGTTGTCTCTCAAACCATCACTGTCAGGTTCAACTTTGATGGGAAAGAGGCAAAGTGATCAAGATTTTGACTTTTCAGTTGGGCAGCAAGTTAGTGGTTATGTCTGCAAAGTGGATAATGAGTGGATCTGGATAGCAATTTCTTTGCAAGTGAGGGCTCAGCTTTTCATCCTTGACACTTCATGTGATCCTGATGAACTTGAGAAATTCCAGAAGCGTTTCAGGGTGGGGGAGAGAGTCTCTGGGTATATCATAAGCATCAATAAAGAAAAGAAGACTCTGCGATTGATTTCCCGTCCATTTTCTGATGTCGTCAATGGAGTAGATGTAGGATTAGTCAAGGAACCTAATATGAGCAGTGATACGTCAGATGAGAAGGGACTTTCTTATGTTCATAAAGGCGATGTTCTTGGTGGCAGGGTGTCGAAGATCCTTCCAGGTGTTGGTGGCATGTTTGTGCAGATAGGCCCTCATTTGTATGGGAAGGTTCACTACACTGAACTCACTGAGTCATTTGTTCCCGACCCTGTATCTGATTATCATGAAGGTCAGTTTGTTAAGTGCAAGGTCCTAGAGATGAGAAACTCAAGCAAGGGCACTGTCCAAATTGATTTGTCTTTGCGCACATCCTTTGAATGCCTTGATGCCAGGGATTCTTCTGACAACCGCATTGAGAAGATTGAAGCGCTTCAGCCTGATATGATGGTAAAGGGTTATGTAAAGAATGTTACCCCTAAAGGGTGCTTCATTATGCTTTCTAGGAGCATTGATGCACAAATTAAGCTAGCTAACTTGTCTGATGGATTTGTTGAAGATCCGGAAAAGGAATTTCCTCTTGGTAGACTTGTAACTGGGAAAGTTATATCTGTGGAACCTCTTTCAAAACGTGTTGAAGTGACTTTGAAGGCAGCTAATAAGAACAGCATCCTCAAATCTGATTCCAGTGATTTAAGTAGTTTGCATGTTGGGGATGTTGTAGAAGGCAGAGTTAAGCGTGTTGAGTCATTTGGTCTATTTATCGTGATTGATACTACAAACTTGGTTGGATTGTGCCATGTCTCAGAGATTTCAGATGAGCGTATTGAGAATATTGATGAGAAATTCAGAGCCGGTGACAGAGTTACTGCAAAAATATTGAAAGTTGATGTGGAGAGACATAGAATTTCACTTGGAATGAAGGCATCTTATTTGAGGGATGGTGATGATGAAGTTAGCATTTCATCACAAAATTCTGATGGAGAAACTGAGCTTGATTTGGTTGTCGATAATCTATCAGAGGGTCCTATGCCTCAAAGTTCATGTTCTGATTCTGAATCTGAGCATGAGGATGGATCAGCTCTTATCCAAGTAGAATCAAGGGCTTCTGTCCCACCCCTTGATGTTATTCTTGATGATATGGAGGAGGATGATACTATGAATGGTGAACTTCACAAAAAGGAAAATGAAGTTGATGCTGTAGAACCTATGGATGAGAAGAGCAAGAGAAAAGAAAAGAAGAAGGCAAAGGAAGAGAAGGAGCTTGAAATCAGGGCTGCTGAACAGCGTTTGCTGGAGAGAGATGTGCCGAGAACTACTGATGAGTTTGAGAAAGCAGTTAGAAGCTCCCCAAACAGTAGCTTTGTCTGGATAAAATACATGCAATTTATGCTTTCTATGGCTGATGTTGAGGGAGCCCGTTCAGTTGCTGAAAGGGCTTTGAAAACCATCAATATAACCTATGAAACAGAGAAGCTGAACATTTGGGTAGCATATCTTAATTTGGAGAATCAATATGGTAATCCTCGCGAGGAAGCCGTAACTGGACTATTCCAAAGGGCACTGCAGTTTTGTGATCCCATGAAGTTGCATTTGGAACTCTTAGGATTGTATGAGAGGACTGAGCAACAAAAGTTGGCTGATGTGCTTCTTGTTAAAATGTGTAAAAAGTTCAAAAATTCATGTGAGGTATGGCTGAGACGAATTCAGTGGCTCTTAAAGCAAAAACCTGAGGGAGTTGATGAAGATGTGAGACGTGCTCTGTTATGTCTTCCTCAATACGAACATATAAAATTTCTTTCACAAGTTGCAATTCTGGAGTTCAAAAGCGGTGTTCCTGATAAAGGGCGCTCGATGTTTGAGAAAATGTTACGTGAATACCCTAAGAGGAGAGATTTGTGGAGTGTATATCTCGATCAGGAAATCAGGCTTGGGGACATGGACTTAATCCGCGCATTGTTCGAGAGAGCAACTAGTTTAAGTCTTCCAGCAAAAAAGATGAAGTTCTTGTTCAAGAAGTACCTCAATTATGAAAAGTCACTTGGTGACAAAGAGCGGATTCAACATGTGATCCAAAAGGCCAATGAATATGTGGAGACTGCTGCAGTGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_41147.p1 GENE.S_Transcript_41147~~S_Transcript_41147.p1 ORF type:complete len:1908 (+),score=453.75,S1|PF00575.19|75,S1|PF00575.19|14,S1|PF00575.19|1.6,S1|PF00575.19|1.3e-06,S1|PF00575.19|0.0023,S1|PF00575.19|5.5,S1|PF00575.19|7e-06,S1|PF00575.19|11,S1|PF00575.19|9.4e+03,S1|PF00575.19|0.004,S1|PF00575.19|1.8,S1|PF00575.19|7.3e-07,S1|PF00575.19|0.023,S1|PF00575.19|6e-18,Suf|PF05843.10|1.3e+04,Suf|PF05843.10|0.0029,Suf|PF05843.10|9.9e-09 S_Transcript_41147:148-5871(+)
MAAISNNKKRKSRDNKPSSNSSNDNNNTNESNSQSLQFDDDVPDFPRGGGSKLSRAERQELREEVDIEFDAQERYSKRKKGRGSKMNGKSTSEDDFGSLFGEGITGKLPRFANKITLKNISPGMKLWGVISEVNEKDLAVSLPGGLRGLVRATEAVEPVVLDSIQDVEGHLLSKLFYVGQLVSCIVLQVDDDKKETGKRKVWLSLRLSLLHKGYNLDAVQEGMVLTAFVKSIEDHGYILHFGLPSFTGFSPKKTEEDTREVIVGQLVQGVVRSIDKARKVVHLSSDAAMVSKCLTKDLKGISLDLLVPGMMVNARIQSTLENGVMLSFLTYFTGTADIFHLESARVAADWKKQYDKNKKVNARILFIDPSTRAVGLTMNPHLLLNKSPPSLVKTGEIYDHSKIIRVDRGFGLLLEIPSLPSPTPAYVPVCDVADEEVSKLERKFKEGSDVRARVLGFRHLDGLAMCVLKASAFEGAVFTHADVKPGMIVKAKVVSLISLGAIVQFPGGVKALCPLQHMSEFDIEKPRKKFKVGAELVFRVLGCKSKRITVTHKKTLVKSKLSILSSYADAVEGLITHGWITSIENRGCFVKFYNGVQGLAPRSELGLEPGCSTSSRYHVGQVVKCRVTSSASRHINLSFIISPTKVSEDDMVKLGSIVSGVVELVTPSEVFLHVNVKGNMKGTIFVEHLADHQGHVAQLKSVLKPGHELSQLLVLDIEGNNLILSAKYSLVHAQPQLPGNATQIRTNTVIHGYVCNLIETGCFVRFLGRLTGFSPRKKSLDDRNIDISEAFYIGQSVRSSVLDVNEETGRVTLSLKQSTCSSTDTSFLQSYFLTEEKIAKLQISDSGSSGSGIGWVENFTIGCAVEGRIHEAKDFGVVVSFEKYADVFGFITHYQLGGKTFETGSPIQAIVLDIAKSERLVDLSLKPEFVKQAEKNISKTPVAKKKRKREARELKLNETVNAIVEVVKEDYLVVSLPEYNFAIGYIAASDYNTQRLRRKQYSNGEALGATVMTLPSDATTGRLLLLESFTQAADTSNSKKAKKRSGYDVGSVVQAEVTDIKPLELRLKFGIGFRGRVHITEAENVVENPFSIYKVGQVLTAKIVAKFVAPENSKKGGLWELSLKPSLSGSTLMGKRQSDQDFDFSVGQQVSGYVCKVDNEWIWIAISLQVRAQLFILDTSCDPDELEKFQKRFRVGERVSGYIISINKEKKTLRLISRPFSDVVNGVDVGLVKEPNMSSDTSDEKGLSYVHKGDVLGGRVSKILPGVGGMFVQIGPHLYGKVHYTELTESFVPDPVSDYHEGQFVKCKVLEMRNSSKGTVQIDLSLRTSFECLDARDSSDNRIEKIEALQPDMMVKGYVKNVTPKGCFIMLSRSIDAQIKLANLSDGFVEDPEKEFPLGRLVTGKVISVEPLSKRVEVTLKAANKNSILKSDSSDLSSLHVGDVVEGRVKRVESFGLFIVIDTTNLVGLCHVSEISDERIENIDEKFRAGDRVTAKILKVDVERHRISLGMKASYLRDGDDEVSISSQNSDGETELDLVVDNLSEGPMPQSSCSDSESEHEDGSALIQVESRASVPPLDVILDDMEEDDTMNGELHKKENEVDAVEPMDEKSKRKEKKKAKEEKELEIRAAEQRLLERDVPRTTDEFEKAVRSSPNSSFVWIKYMQFMLSMADVEGARSVAERALKTINITYETEKLNIWVAYLNLENQYGNPREEAVTGLFQRALQFCDPMKLHLELLGLYERTEQQKLADVLLVKMCKKFKNSCEVWLRRIQWLLKQKPEGVDEDVRRALLCLPQYEHIKFLSQVAILEFKSGVPDKGRSMFEKMLREYPKRRDLWSVYLDQEIRLGDMDLIRALFERATSLSLPAKKMKFLFKKYLNYEKSLGDKERIQHVIQKANEYVETAAV*

Click here to download the sequence:
Link to NCBI Protein BLAST