Transcript Information: S_Transcript_411815.p1


Annotated TAIR IDAT5G48050.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19472661-19473770 | Reverse length=369
E-Value1E-08
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.23761608245697
Replicate 20.55156973893787
Replicate 30.098800371876432
Condition 2: 8 Hour
Replicate 10.22848632482643
Replicate 20.11984918914139
Replicate 30.11419204074097
Condition 3: 24 Hour
Replicate 10.23405232311351
Replicate 20.32376873680496
Replicate 30.22519682504568


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_411815.p1 GENE.S_Transcript_411815~~S_Transcript_411815.p1 ORF type:complete len:560 (+),score=59.92,UBN2|PF14223.2|3.4e-13,UBN2_3|PF14244.2|4.7e-11,UBN2_3|PF14244.2|6.2e+03,UBN2_2|PF14227.2|7.4e-07 S_Transcript_411815:191-1870(+)
ATGGATGAAGTCCCCCCCTCCACCACCGTGCAGACCACCATCGTTAACCAGCCCTACCCACAAACACCGGCATCAGTCTCTACAGTAGTCAGTCCCCCGCCGGGTTCTTCTTTCCCCCCTCCACCGCCACAAATTCCGAGCTCACCTGGGTTCTTCAATCTTAATGTGATAAATTTGGTGACAGTCAAACTTGGATCGGAGGATGATTACCGCATTTGGCGAACACAATTTTCTGGCCTCTTGGAGTCTCAGCGCCTCATGGGATACGTTGATGGCTCTATTCCAACTCCTCCGGCTACTATCAATGATCATCATGGTTGTCCCATTGATAATCCGGACTATGCCTCGTGGCTGCACATAGATAAAAATATTCGAATTTGGCTTCTTGCTACTCTCTCTCGCAACATATTGTTTGAGGTACATTATCTTGTTCACTCATATCAAATTTGGTCTCGACTTGAATTTCGTTTCGAAGATAGTTTGGCTCGGTCTTTAAAACGTACTTTTAATGGAATTTACCAAAAGTCATATAAGTCCATTGAAGATTATTTGCGTAAAATCAAAGATGCTGCTGATGACTTGGAGGCTGTCGGTTATCATGTATCTGATCGACACCTAATTAATCGTGTAATTTCTGGCCTTGATGAGTACTACGGTGTTTTTGCCACTGATATTGATCGATCTTGGGACACTCTCACTTTTAATCAATTGCGTTGGCGCCTTATTTCACATGAGCAGCATCTCAAACACATGAAGGCTCGTAATAATGCTCGCGGACGAGGAGGAGGTGACCGTCGCCTTTCTGCATCGAATACCGCTCAAAATCAGCCCTCTACGACCCGCAATTCTCACTCTTCTGGAAGGACCAATAATGATGATGTTGAGCAGGAGGAAGAGGAAAGGGATCATAAAATGAGGAATATGGAGTTGGTGAGAGCCGGGTATAAAGATGATTGGAAGCGTGCATTGGCGATAGTGAGAAAGGATCCTGCAGCTCTCACAGACGACATCATTGAAGTTGCCATGGCAAGGTGTCACGACGAAGATGCCCTGAAGGAGTTAATAGAGTTGATCTATAACAAGTACGATTCCGAAGAGGATATTATAAAAAGACTAAGTGTGGCAACTTGTACCAACAACTTTGATGTTGTCAAAATGTTTCTCAACAACAATACACTGGTAATAAAAGGGGAGACTCTCCTCCACCTATCTGTCCAAGCAACCAAATGTGGGAATAAGGAAATTCTCGAATATTTTTGGTACAAGGCCAAAATCCATGACAAAGAGGCCTGCTTGGTTAAAGACAATTTTGAAGTCCTTGGCCTTGTTGAGTATACTATTAAAGCTGGCCTTATCGGACATGCTTATCATGTCATCAAAAACAGAGTAGAAGAGAAGGATATTCCGGAGTTGAAGAGCTTCTGGGAAATGATTTTCCAAGGACTGGCTGAAAAGCCCGAGGTGTTTCGGAGTGGAAGTAAACTCGGACCAATTGAAGGGTTAATCTATCGCTTGATTCCGGCCAACATTGAAGATACGCCTTCATACAGCATCGGGAAATTTACTAAAGAGAACGTCTTATACAATACCGTAGGAAGCATGCAAAGCAGAAGACAACGATGGCGTTGGAACTTCATAAAAACTCTAGGTAATCATGCACCTACCCGGCCGTTTAACTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_411815.p1 GENE.S_Transcript_411815~~S_Transcript_411815.p1 ORF type:complete len:560 (+),score=59.92,UBN2|PF14223.2|3.4e-13,UBN2_3|PF14244.2|4.7e-11,UBN2_3|PF14244.2|6.2e+03,UBN2_2|PF14227.2|7.4e-07 S_Transcript_411815:191-1870(+)
MDEVPPSTTVQTTIVNQPYPQTPASVSTVVSPPPGSSFPPPPPQIPSSPGFFNLNVINLVTVKLGSEDDYRIWRTQFSGLLESQRLMGYVDGSIPTPPATINDHHGCPIDNPDYASWLHIDKNIRIWLLATLSRNILFEVHYLVHSYQIWSRLEFRFEDSLARSLKRTFNGIYQKSYKSIEDYLRKIKDAADDLEAVGYHVSDRHLINRVISGLDEYYGVFATDIDRSWDTLTFNQLRWRLISHEQHLKHMKARNNARGRGGGDRRLSASNTAQNQPSTTRNSHSSGRTNNDDVEQEEEERDHKMRNMELVRAGYKDDWKRALAIVRKDPAALTDDIIEVAMARCHDEDALKELIELIYNKYDSEEDIIKRLSVATCTNNFDVVKMFLNNNTLVIKGETLLHLSVQATKCGNKEILEYFWYKAKIHDKEACLVKDNFEVLGLVEYTIKAGLIGHAYHVIKNRVEEKDIPELKSFWEMIFQGLAEKPEVFRSGSKLGPIEGLIYRLIPANIEDTPSYSIGKFTKENVLYNTVGSMQSRRQRWRWNFIKTLGNHAPTRPFN*

Click here to download the sequence:
Link to NCBI Protein BLAST