Transcript Information: S_Transcript_41228.p1


Annotated TAIR IDAT4G09040.1
Annotated Gene NameRNA-binding (RRM/RBD/RNP motifs) family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:5795075-5797315 | Reverse length=304
E-Value1.8E-84
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 125.707797111535
Replicate 228.891748230079
Replicate 334.376256373514
Condition 2: 8 Hour
Replicate 139.459225620817
Replicate 244.058844770074
Replicate 347.996908552713
Condition 3: 24 Hour
Replicate 120.284534669837
Replicate 224.513918643804
Replicate 322.13363080449


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_41228.p1 GENE.S_Transcript_41228~~S_Transcript_41228.p1 ORF type:complete len:294 (+),score=61.24,RRM_1|PF00076.18|3.1e-13,RRM_1|PF00076.18|1e-14,RRM_6|PF14259.2|2.3e-14,RRM_6|PF14259.2|7.8e-11,RRM_5|PF13893.2|9.9e-09,RRM_5|PF13893.2|5.2e-06,RRM_occluded|PF16842.1|1.9e-05,RRM_occluded|PF16842.1|4.6e+02 S_Transcript_41228:119-1000(+)
ATGGCAGCTCAAGTAGGTTCACTATGCTTCCCATCTACTTCTACAGCCTCATTCTCTTTTCTTGACCCAAGCCCTAATTTATCTTCACTATCCCCTCTTCCTACCCTTTCTCTCTTCTCCCGTAATATTAATGAACTCAAACCCATCTCCTTCTCTCTTCGCCGAACCTCTCGACTAGACCCCATTTTCTGCTCAACCACCCTCGCCCATGAAAACCCTTCATCGGAATCCAAAGAAGACGAGAATTCGACCACTAGATTGCTTGCCCACAACGTCCCTTGGACTTCCACCCCTGATGATATTCGAGCTTTGTTTGAGAAACATGGCACTGTCGTCGATGTTGAGCTTTCAATGCATAAGAAGAATAGGAACAGGGGATTGGCGTTTGTTGAAATGGGTTCTGCTGAGGAGGCTGCTGAAGCTTTTGCCAAGCTTGAGGCGTATGAATTTGAGGGCCGGAAGTTAAAGCTGACCTATGCTAAGCGAAAGAAGAAGCAACCCTCTCCTCCTGTACAATCTAAGCCAGCTGTTCTTTACAACCTATTTGTGGCGAATTTGTCGTTTGAGGCACGGGGTAAAGATTTGAAAGAGTTCTTTCAGTCAGGTGGTAGTAATGTGGTCTCCGCTGAGGTCATATTTCACGATTTTCCGAGAAGATCCTCTGGATATGGATTTGTTTCTTTTAAAACAAAGAAAGAAGCAGATGAAGCCCTTTCAACTTACCAAGGAAAGGAGCTGATGGGGAGACCAATCAGAGTTGCACGCAGTAAGAGGTTCGTAAAACTTGAGTCAGAAATGAGTTCTCAGTCAGAACATGATGAAGACACGGAAGCTAATTCAGGTCTTGATTCCGACCAACCTGAGACTGTTGAAAACCTATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_41228.p1 GENE.S_Transcript_41228~~S_Transcript_41228.p1 ORF type:complete len:294 (+),score=61.24,RRM_1|PF00076.18|3.1e-13,RRM_1|PF00076.18|1e-14,RRM_6|PF14259.2|2.3e-14,RRM_6|PF14259.2|7.8e-11,RRM_5|PF13893.2|9.9e-09,RRM_5|PF13893.2|5.2e-06,RRM_occluded|PF16842.1|1.9e-05,RRM_occluded|PF16842.1|4.6e+02 S_Transcript_41228:119-1000(+)
MAAQVGSLCFPSTSTASFSFLDPSPNLSSLSPLPTLSLFSRNINELKPISFSLRRTSRLDPIFCSTTLAHENPSSESKEDENSTTRLLAHNVPWTSTPDDIRALFEKHGTVVDVELSMHKKNRNRGLAFVEMGSAEEAAEAFAKLEAYEFEGRKLKLTYAKRKKKQPSPPVQSKPAVLYNLFVANLSFEARGKDLKEFFQSGGSNVVSAEVIFHDFPRRSSGYGFVSFKTKKEADEALSTYQGKELMGRPIRVARSKRFVKLESEMSSQSEHDEDTEANSGLDSDQPETVENL*

Click here to download the sequence:
Link to NCBI Protein BLAST