Transcript Information: S_Transcript_412521.p1


Annotated TAIR IDATMG00300.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)ORF145A
Annotation TypeHomolog
Chromosome PositionchrM:89617-90054 | Reverse length=145
E-Value9E-18
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.45363070287239
Replicate 20.12535675884952
Replicate 30
Condition 2: 8 Hour
Replicate 10.36350097131477
Replicate 20
Replicate 30.12111277048285
Condition 3: 24 Hour
Replicate 10.12411865619656
Replicate 20
Replicate 30.57322828193446


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_412521.p1 GENE.S_Transcript_412521~~S_Transcript_412521.p1 ORF type:5prime_partial len:176 (+),score=12.59,gag_pre-integrs|PF13976.2|5.7e+03,gag_pre-integrs|PF13976.2|1.4e-14 S_Transcript_412521:3-530(+)
ACAATTCAGATTAAAATGCATCATGGATGTATTAGGACTTTGTCTAATGTTCGTCATATTCCTGATTTAAAACGTATCCTATTTTCTTTAGGTACCCTTGAGTCTCTTGGGTGTAAGTATTCAACTGAAGATGGAATTTTAAAGGTTTCAAAAGGTGCCCTTGTCCTGTTAAAGGGAAAAAGAGTTGGTTGTCTCTACATCTTGCAGGGTTCTACATCGACAGGTTCTGAAGGTTCCAATACAGTAGCATTATCAACTACTTCTTCTGATGATGAGCTCGCTCGTTTATGGCACATGCGTTTAGGCCATATGAGTGAGAAAGGCATGAACCTAAGCAAGCATGGTCTCCTTGGTAGCAAAGGTACGAGTAAGTTAGAGTTTTGTGAGCACTGTGTCTATGGGAAACAGAAAAAGGTTGGTTTCTCTACTGCAACTCATCCACTACAAAAACTCGCGCATTTAGCGATTGAAAATATCGGTCGCAAGGTACTGAAAATCGGTCGCGAAGGACCTTTTACGACCGATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_412521.p1 GENE.S_Transcript_412521~~S_Transcript_412521.p1 ORF type:5prime_partial len:176 (+),score=12.59,gag_pre-integrs|PF13976.2|5.7e+03,gag_pre-integrs|PF13976.2|1.4e-14 S_Transcript_412521:3-530(+)
TIQIKMHHGCIRTLSNVRHIPDLKRILFSLGTLESLGCKYSTEDGILKVSKGALVLLKGKRVGCLYILQGSTSTGSEGSNTVALSTTSSDDELARLWHMRLGHMSEKGMNLSKHGLLGSKGTSKLEFCEHCVYGKQKKVGFSTATHPLQKLAHLAIENIGRKVLKIGREGPFTTD*

Click here to download the sequence:
Link to NCBI Protein BLAST