Transcript Information: S_Transcript_413573.p1


Annotated TAIR IDAT2G03820.1
Annotated Gene Namenonsense-mediated mRNA decay NMD3 family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr2:1165149-1166699 | Reverse length=516
E-Value7E-46
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.2767776722113
Replicate 22.4327790766841
Replicate 32.0686719181225
Condition 2: 8 Hour
Replicate 13.4055756399984
Replicate 22.0840695500886
Replicate 32.6746120568988
Condition 3: 24 Hour
Replicate 12.5333420017609
Replicate 21.9389192413225
Replicate 33.1167925595676


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_413573.p1 GENE.S_Transcript_413573~~S_Transcript_413573.p1 ORF type:complete len:526 (+),score=73.14,NMD3|PF04981.9|1.5e-18 S_Transcript_413573:154-1731(+)
ATGCATTCAAAGATTGGTAATATCATTCACATGGACGATGATACGATTTCAACTGCCGCAACGCCACCCAAAAACAAGGCAATCAATTCCAACAGGAACAAACAATTTGCTCCTAATCTTAATTCAGTAAAGATTGCCAAAAAGAAGCCAAGCACACCCAGACGCCCTGGACTTAAACTCCATTACCCTTACCAATGTTATTGTGTTCCCTTAAAGCAACGTTTCCCTAAGATCACCAAGTGTGGATATTGTCAAACTCATGATCAACGCCCTGCAAGGGCATTACCACTGGCGCGTTCCATCTTCTGCTGTAGCGATTGCTCGTCTTATTCAGCGGACAGAAGAACTTGGATTCAAGCTGGACGAGAGTCAAAAGAGCTCTTAGATTTTCTCTTGAGAATTCTTAGACTCAATAGCTATGAGCTAATCAGGGAGAAACTGGATTTTATAGGTGCTTCCTTTGTGACGAAACAGCCTAATTCTCCGAATATGGACATCCGCTTAGCTTTTCGAAAGAGGAGTACACAACAGGAAATATTTCAGCGTATGAACATCCGTCTCCACCAACAAACTTGCAGAGTTTGCTTAAGAAAGGATCCCACTCCTGGATCATGGGGCACTATGGTGCAACTTAGGCAATATGGTTCTCACAATGAAAGTCGTCTCAAATTGGAACGTACCATCCTTAACGACTCCTTAGTTGCTGCTCTTATCATGAGGTTCAAACAAATGGATCATGGTTCATATTTCTTCTTTCGTACAGAGATAATGGCTATTCGCTTTTGCAACTATCTCTCTGTATTCTCTCCAATTAGGAAAGATGAAATTCAGAAGAATAATTCGTCGAGCTCTGAGAGTTGCATTACAGTTTGGGTATGCCCCATCTGCGTGCATGATCTAGTTTATCTGCCACCACAGGTTTCAACCTCACTTGGAAACCTCGGTCCCCTGATGATTTGTCGTAGGGTGAGAAGTAGAGTCAGGTTGAGGGATCCCTTTACTTTGAGGTCGTGCATTTTAAGTGCTGCTGATTATTGGAAAGCACCCTTTGAGCCTCTAATGACTACTAAGGATTTTGTTGAGTTTGTGGTGATGGATGTGGAAAATTCTCCAAGTGGAACGGACAATTCTTCAGTTCCTATCCAAGTTGCTCGAGTATCAGAGTTTGGCAAGATTGACAAGAGTTTTGCGTTGAGAAGTCATGTTCTTCGTCAGAATTTGAAGCGTGGGGACTTTGTTTTTGGTTATGACATCCGCGAGGCAAATATCAACAATATGGAAGTTGAGAAACTCAGGGATCCACAGAAACTTGATCTGGTTCTGGTCGCAAAGAAAGGGGATTGGATTCTTCGATGTGAAAAGGCTGCTGCAATGGAGGAGAAAAGTCCAGAGTATCAGTATCAAGATTTTCTGAAAGACTTGGAGAAAAATAGTGAGGCTATGTTCAACCTGTCGTTAGGTAGTGGAGATGATGAGAATCCAAGCCTAAAGTCGTACAGCGATTCTCTTAATTTGAAGTTCACAGCTCAATGTGACATATCTACATCTTCAAATTTGAAGTTGACAGAACTAAATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_413573.p1 GENE.S_Transcript_413573~~S_Transcript_413573.p1 ORF type:complete len:526 (+),score=73.14,NMD3|PF04981.9|1.5e-18 S_Transcript_413573:154-1731(+)
MHSKIGNIIHMDDDTISTAATPPKNKAINSNRNKQFAPNLNSVKIAKKKPSTPRRPGLKLHYPYQCYCVPLKQRFPKITKCGYCQTHDQRPARALPLARSIFCCSDCSSYSADRRTWIQAGRESKELLDFLLRILRLNSYELIREKLDFIGASFVTKQPNSPNMDIRLAFRKRSTQQEIFQRMNIRLHQQTCRVCLRKDPTPGSWGTMVQLRQYGSHNESRLKLERTILNDSLVAALIMRFKQMDHGSYFFFRTEIMAIRFCNYLSVFSPIRKDEIQKNNSSSSESCITVWVCPICVHDLVYLPPQVSTSLGNLGPLMICRRVRSRVRLRDPFTLRSCILSAADYWKAPFEPLMTTKDFVEFVVMDVENSPSGTDNSSVPIQVARVSEFGKIDKSFALRSHVLRQNLKRGDFVFGYDIREANINNMEVEKLRDPQKLDLVLVAKKGDWILRCEKAAAMEEKSPEYQYQDFLKDLEKNSEAMFNLSLGSGDDENPSLKSYSDSLNLKFTAQCDISTSSNLKLTELN*

Click here to download the sequence:
Link to NCBI Protein BLAST