Transcript Information: S_Transcript_416102.p1


Annotated TAIR IDAT5G12350.1
Annotated Gene NameRegulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:3995789-4000545 | Forward length=1075
E-Value3.1E-274
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.0884642224917
Replicate 23.9574510417067
Replicate 34.3832511768199
Condition 2: 8 Hour
Replicate 14.4467742141107
Replicate 25.618042707734
Replicate 34.3014042252205
Condition 3: 24 Hour
Replicate 14.7020377020113
Replicate 24.065257681856
Replicate 34.5806851946511


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_416102.p1 GENE.S_Transcript_416102~~S_Transcript_416102.p1 ORF type:3prime_partial len:446 (-),score=103.08,RCC1|PF00415.14|0.053,RCC1|PF00415.14|2.2e-11,RCC1|PF00415.14|1.9e-09,RCC1|PF00415.14|3.4,RCC1_2|PF13540.2|3.4e+03,RCC1_2|PF13540.2|2.3e+03,RCC1_2|PF13540.2|0.00046,RCC1_2|PF13540.2|7.1e-07,RCC1_2|PF13540.2|0.0022,PH_12|PF16457.1|2.7e-08 S_Transcript_416102:2-1336(-)
ATGGATAGGATGGGTTCGGATCTTACACGTAATGGTCCTGTCGAAAGAGATATTGAGCAGGCAATTACAGCCCTTAAGAAGGGTGCATATCTTCTTAAATATGGAAGAAGAGGAAAGCCAAAATTTTGTCCATTTCGTCTATCTAATGATGAGTCTGTTTTGATATGGTTCTCGGGGAAAGAGGAGAAGCACCTGAAGCTAAGCCATGTTTCCAGAATCATATCTGGTCAGCGCACACCAATTTTCCAAAGGTATCCTCGTCCAGAGAAGGAATACCAGTCTTTTTCTCTCATATATAATGATAGATCATTGGATTTGATTTGCAAAGATAAAGATGAAGCTGAGGTATGGTTTAGTGGTCTCAAAGCCTTAATATCAAGGAGCCATCAAAGGAAATGGAGAACAGAATCAAGAAGTGATGGGATTCCATCTGAAGGAAATAGTCCACGAACATATACCCGAAGAAGCTCCCCTTTACACTCTCCCTTTGCCAGTGGGGATGGCTTGCCAAAGGATGGCAGCGATCACCTTCGCCTCCATACTCCATATGACAGTCCCCCTAAGAATGGTTTGGATAAGGCATTTTCAGATGTGATGTTTGCTGTTCCTCCAAAGGGGTTTTTCCCCTCAGATTCTGCTGGATCTGCCCATTCCTTGTCATCAGGGTCTGATAGTGTATATAGTCACATGAAGGGAATGGGTGCGGATACTTTTAGAATGAGTTTATCAAGTGCTGTAAGCTCATCAAGTCAGGGTTCTGGTCATGATGATGGGGATGCCCTGGGTGATGTTTTCATTTGGGGAGAAACTACAGGAGATGGCATTTTGGGTGGTGGAGTGCATAGAGTAGGGAGCTGTTATGGTGTCAAGATGGATTCTCTTTTGCCCAAGGCCTTAGAGTCTGCTGTGGTCCTTGATGTTCAGAACATAGCTTGTGGTGGACGCCATGCAGCTTTGGTTACTAAACAAGGGGAGATTTTTTCTTGGGGTGAGGAATCTGGCGGTAGGCTAGGGCATGGGGTTGATGCTGATGTGTCACATCCAAAGCTTATAGATGCCCTCAGCAATACTAACATTGAGCTTGTAGCATGTGGTGAGCATCATACTTGTGCTGTTACCCTTTCTGGTGAGCTATATACATGGGGTGATGGTGCTTTCAATTTTGGTCTTCTTGGGCATGGAAATTATGTGAGTCATTGGGTTCCAAAGAGAGTGAATGGTCCATTGGAGGGTATACATGTTTCATACATCTCCTGCGGACCCTGGCATACAGCGGTTGTCACCTCTGCTGGCCAGTTGTTTACTTTTGGTGATGGTACATTTGGTGTTTTAGGC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_416102.p1 GENE.S_Transcript_416102~~S_Transcript_416102.p1 ORF type:3prime_partial len:446 (-),score=103.08,RCC1|PF00415.14|0.053,RCC1|PF00415.14|2.2e-11,RCC1|PF00415.14|1.9e-09,RCC1|PF00415.14|3.4,RCC1_2|PF13540.2|3.4e+03,RCC1_2|PF13540.2|2.3e+03,RCC1_2|PF13540.2|0.00046,RCC1_2|PF13540.2|7.1e-07,RCC1_2|PF13540.2|0.0022,PH_12|PF16457.1|2.7e-08 S_Transcript_416102:2-1336(-)
MDRMGSDLTRNGPVERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHQRKWRTESRSDGIPSEGNSPRTYTRRSSPLHSPFASGDGLPKDGSDHLRLHTPYDSPPKNGLDKAFSDVMFAVPPKGFFPSDSAGSAHSLSSGSDSVYSHMKGMGADTFRMSLSSAVSSSSQGSGHDDGDALGDVFIWGETTGDGILGGGVHRVGSCYGVKMDSLLPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEESGGRLGHGVDADVSHPKLIDALSNTNIELVACGEHHTCAVTLSGELYTWGDGAFNFGLLGHGNYVSHWVPKRVNGPLEGIHVSYISCGPWHTAVVTSAGQLFTFGDGTFGVLG

Click here to download the sequence:
Link to NCBI Protein BLAST