Transcript Information: S_Transcript_4165.p1


Annotated TAIR IDAT1G34070.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:12402283-12403209 | Forward length=308
E-Value2E-15
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.7928758726858
Replicate 23.2049104830916
Replicate 32.6402232709154
Condition 2: 8 Hour
Replicate 12.2896734866817
Replicate 22.1194382921846
Replicate 33.410535616797
Condition 3: 24 Hour
Replicate 13.6331490436988
Replicate 23.2922168395115
Replicate 32.9735462877611


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_4165.p1 GENE.S_Transcript_4165~~S_Transcript_4165.p1 ORF type:complete len:475 (+),score=50.72,UBN2|PF14223.2|6.9e-17,UBN2_2|PF14227.2|1.6e-14,UBN2_2|PF14227.2|8.7e+03,UBN2_3|PF14244.2|8.6e-10 S_Transcript_4165:801-2225(+)
ATGAAGACAACGCTGCACTCTGTTGAAGATTTCCTCTCATGGCGAACCCAATTTTTAGCGTTCTTAATCTCTCAAGGCCTTGCTGGTAATGTTGATGGTACTATCCCTCCTCCTATTGAATCTTTTGTGGACTCATATGGCGTCATAAGGTACAATCCCGAATATTCCGCTTGGCTTCGTTTGGATCAAAGTGTTCGTTGTTGGCTTTATGCAACTTTGTCAAAAGAATTGTTAGTAGAGTTTCATGATATTCAACATTCCCACGACATATGGACTAAATTGCATACTCGCTTCAATACTGACAGTTTAGCTCGTTCCATAGAATTAAAACGATCACTTACTATGCTTAAGAAATCTGACCAACAAACTATGGAAGCTTATTTGCGAGATGTTAAACGTATTGCCGATGCTTTAACGTCTATTCGTAATCCTGTCTCCAATGAAGATTTAGCTCAATATACACTTATGGGGTTGCCTGCTGAATATGAAACTCTAGTCACTATGTTGTTGCATCAGTCTGGTACTTTGGTTTTTGATGAGCTTCGAGCCAAGTTAATTTGGCATGAGCAAAGATTGCGTCTGTTGCGTGCCCCTGATGCGTCTATAATGCACCAAGCACTTGCTACTACTACTAATACCACACGGCCAGGATCATCAGGGGAATCTTACAACCAATCCTCTCGATCTAATGGGGGTGGACGTGGAGGTTCATCGAACAATAACCGTCGTTGGCGCAACAATAACTACCGCAACAATCGTGGTCGTGGTCGTGGCAGTCGTGGTCAGCAAGGAGGGCGAAATTACACCAACAACAACAATTCTGCGCCTTCTAGCAACAATCATACTGGTTTGCTTTTATGTTCTGCAAATGTCAATTCTGGTTTAGAATTAGCTAGCACTGGCACTTCCAAATTGTGTACTAATAATTTATTGACTGCAGGCACCACTACTCAGGAAGGAGTGTTAGGTTCTCCCCCCGTCCCTTTGGTTTGTCGTGTCTGCTATTATCATGGTCACTCTGCATCTCAATGTCCTTTTAGATCCACCTCTGGTTCGACCACAATGCCTCCTCCAGTGTCCGCTCAATCCTTTGCCTCCATGACCACTGGTGAGACCACAAATGAGCCATGGTATCTGGATTCCGCTGCGGCAGCCCATATGACTCCTTCGGAAGGTAAACTTATTTCTTCAAAACCTTATTCTGGTTCAAATTTTATAATTGTTGCCAATGGTACAAAGGTCCCAATAGCTAGGTCTGGTGTCTCTGTTTTACCTACCTCATCCAAGCCTCTAGTCCTTAAAGATGTGTATCAAGCCCCCAACCTTAAGCATAATTTGTTGTCCATTCAACGTCTCTGCCATGATAACAATTGCCTTGTTAACTTTGATTCTTCTTCTGTCAAACTTAAGGACAAGAGCACATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_4165.p1 GENE.S_Transcript_4165~~S_Transcript_4165.p1 ORF type:complete len:475 (+),score=50.72,UBN2|PF14223.2|6.9e-17,UBN2_2|PF14227.2|1.6e-14,UBN2_2|PF14227.2|8.7e+03,UBN2_3|PF14244.2|8.6e-10 S_Transcript_4165:801-2225(+)
MKTTLHSVEDFLSWRTQFLAFLISQGLAGNVDGTIPPPIESFVDSYGVIRYNPEYSAWLRLDQSVRCWLYATLSKELLVEFHDIQHSHDIWTKLHTRFNTDSLARSIELKRSLTMLKKSDQQTMEAYLRDVKRIADALTSIRNPVSNEDLAQYTLMGLPAEYETLVTMLLHQSGTLVFDELRAKLIWHEQRLRLLRAPDASIMHQALATTTNTTRPGSSGESYNQSSRSNGGGRGGSSNNNRRWRNNNYRNNRGRGRGSRGQQGGRNYTNNNNSAPSSNNHTGLLLCSANVNSGLELASTGTSKLCTNNLLTAGTTTQEGVLGSPPVPLVCRVCYYHGHSASQCPFRSTSGSTTMPPPVSAQSFASMTTGETTNEPWYLDSAAAAHMTPSEGKLISSKPYSGSNFIIVANGTKVPIARSGVSVLPTSSKPLVLKDVYQAPNLKHNLLSIQRLCHDNNCLVNFDSSSVKLKDKST*

Click here to download the sequence:
Link to NCBI Protein BLAST