Transcript Information: S_Transcript_4166.p1


Annotated TAIR IDAT1G34070.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:12402283-12403209 | Forward length=308
E-Value8E-07
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.951144691426
Replicate 23.3203406066755
Replicate 33.6155066777752
Condition 2: 8 Hour
Replicate 12.9559946974244
Replicate 24.4300690375696
Replicate 34.3897983186496
Condition 3: 24 Hour
Replicate 12.8982320670689
Replicate 23.18639727113
Replicate 32.0976749802275


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_4166.p1 GENE.S_Transcript_4166~~S_Transcript_4166.p1 ORF type:3prime_partial len:505 (+),score=59.96,UBN2|PF14223.2|1.8e-10,UBN2_2|PF14227.2|2e-07,gag_pre-integrs|PF13976.2|2.5e-07 S_Transcript_4166:1143-2654(+)
ATGGTCAAGAAAACTGAACCGCAAACTATGGAAGCATATTTGCGTGATATTAAACGTATTGCTGATGCATTAGCTTCAATTCGTAGTCCAGTGTCTAATGATGATTTAGTTCAATATACTCTCATGGGACTCCCTGCTGAATATGAGACACTAGTCACTGTTTTGCTACACCAGTCTGCTACTCTTGTTTTTGATGATCTTCGCGCAAAATTAATTCATCATGAACAACGGTTGCGTATGCTGACAGCCCCTGATTCTAGTGTAGTCCATCAAGCACTTGCTGTTAGTACTCACAACAATGCTCGGAACAATAATTCTAGTGAGCCTAGTTCATCTCGCTCTAACAACAATGGGGGTGGTCGCGGCAACTCTCGTTGGTGCAACAATAATTATAGATATAACAGGGACCAAGATAGGGGTGGCCGTGGTCAGCAAGGTGGGCAATTCAACAACAACAATTTCAACTCTGCATCTACCAACAATCAAAGTGGTTTGCCTTTATATTCTGCAAATGTCAATTCTTGTTTGGAAATAGTTAATAATGGTACTTCCAAATCATGTGCTAATGGTTTGTTGACTGCAGGCACCACTACTCAGGAAGGAGTGTTAGGTTCTCCCTCCGTTCCATTGGTTTGTCGTGTTTGTTATTATCCAGGTCATCCTGCCTCTCAGTGTCCCTTCCGTACCATTTCCGCCACTGCGTCTGCCACTCTTCCAGGGTCCGCTCAGTCTTTTGCATCCATGACCATCGGTGAGACCAATGACGAGCCTTGGTATCCTGACTCTGCTGCGGCAGCCCATATGACTCCATCGAAAGTTAACTTGATTTCTTCAAAACCTTATACTGATAAAAATTATATAATTGTTGCTAATGGTACAAAGGTTCCCATTGCTCGTTCTGGTATCTCTGTGTTGCCCACTCCCTCAAAACCATTAGTGCTTCGGGATGTCTACCAAACACCTCACCTTAAACACAATCTCCTATCAATTCAGCGTTTGTGTTATGATAATAATTTTTTTGTTAACTTTGACTCCTCTTCTGTTAAAATTAAGGACAAGAGCACAGGAGCCACCCTGCTTGAGGCGCCAAATAACGGAAGTGTCTACCCTATTCATCCAGTCCGTTTGTCTATTCCTGCTTTTTTCAGTGCCCAGCAATCCAGTTCGTTTTGGCATCAATGTTTAGGTCATGCAGGTCAACCTACTTTGGATTATCTTAGGCGTAGCAATTTAATTTCTAGCATTTCTAAAGTTCATGAACATTGTGTGTCATGTAAGTTGGCCAAATCCCACAAATTGCCTTTTACTGCTGTTCATCATTTTGCTACAAAACCTTTATATTTAATACATTCCGATGTTTGGCAATCTCCTGTTGTTTCAAATCTTGGTTTTAAGTATTATGTTGTTTTTGTTGATGATTACTCTCGCTTTACTTGGCTTTATCCAATGAAACGCAAAAATGAGGTTTTTGACATCTTTTGCCGTTTTAAATACATGTGGAAAACTTATTGG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_4166.p1 GENE.S_Transcript_4166~~S_Transcript_4166.p1 ORF type:3prime_partial len:505 (+),score=59.96,UBN2|PF14223.2|1.8e-10,UBN2_2|PF14227.2|2e-07,gag_pre-integrs|PF13976.2|2.5e-07 S_Transcript_4166:1143-2654(+)
MVKKTEPQTMEAYLRDIKRIADALASIRSPVSNDDLVQYTLMGLPAEYETLVTVLLHQSATLVFDDLRAKLIHHEQRLRMLTAPDSSVVHQALAVSTHNNARNNNSSEPSSSRSNNNGGGRGNSRWCNNNYRYNRDQDRGGRGQQGGQFNNNNFNSASTNNQSGLPLYSANVNSCLEIVNNGTSKSCANGLLTAGTTTQEGVLGSPSVPLVCRVCYYPGHPASQCPFRTISATASATLPGSAQSFASMTIGETNDEPWYPDSAAAAHMTPSKVNLISSKPYTDKNYIIVANGTKVPIARSGISVLPTPSKPLVLRDVYQTPHLKHNLLSIQRLCYDNNFFVNFDSSSVKIKDKSTGATLLEAPNNGSVYPIHPVRLSIPAFFSAQQSSSFWHQCLGHAGQPTLDYLRRSNLISSISKVHEHCVSCKLAKSHKLPFTAVHHFATKPLYLIHSDVWQSPVVSNLGFKYYVVFVDDYSRFTWLYPMKRKNEVFDIFCRFKYMWKTYW

Click here to download the sequence:
Link to NCBI Protein BLAST