Transcript Information: S_Transcript_4167.p2


Annotated TAIR IDAT1G34070.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:12402283-12403209 | Forward length=308
E-Value5E-11
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 113.480441802134
Replicate 222.711695132736
Replicate 324.168422122627
Condition 2: 8 Hour
Replicate 13.9723766277012
Replicate 23.5093095905453
Replicate 33.970599063673
Condition 3: 24 Hour
Replicate 132.91010225217
Replicate 232.810681465104
Replicate 335.525167119624


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_4167.p2 GENE.S_Transcript_4167~~S_Transcript_4167.p2 ORF type:complete len:306 (+),score=28.00,UBN2_3|PF14244.2|1.4e-13,UBN2|PF14223.2|6.2e-11,UBN2_2|PF14227.2|7.8e-09 S_Transcript_4167:55-972(+)
ATGGCTTCAGGACCACCAAACTCTGCTTCCCCTGATACTACTCAGCCTTCTTCTCCTCCATTCATCTCACAACCTCCTATAACCACTCCCATATCAAATCCTACTTTGTCTTTTTCTCCCCCACATCCAGAGGGCCTTTCGGCTCCTCCACTATCATGGGTATTTTCCCAACCTTCAATTCCACAAAACTTGTTTCCCAACTCTGTTTTCGAACATGGTGAGTCTAGTCAAAGTCGTCCCCCACCTCCGTTCTCTGTGGCAATTGGTTCAGGTTCACTTGGTCCGCATCTATTGGGTGGTTTTTCTCCCTCTATCTCAGGGCATGCGTTTCCTCCTGTCTCGGCTCCCAACGTCACCAATATTGTTACTACGACGTTGACCTCGGTTGACGATTTTTTATCCTGGAGAACACAATTTTCCGCCTTTCTAATATCTCAAGGCCTTGCTGGGTATGTTGATGGCTCCATTCCTCCTCCTGTTCAGTCCTTTGTCGACTCCTTTGGTGTGGTCAGGTACAATCCCGAATACTCTTCCTGGCTGCGTTATGATCAGAGTGTTCGTTGTTGGTTGTACACTACTTTGTCTAAAGAATTGTTGGTTGAGTTTCACGACATTCAACACTCTTATGAAATATGGAGTCGGTTGCATAATCGATTTAACACTGATAGCTTGGCACGTTCTATTGAATTAAAACGCTCTCTTACTATGATTAAAAAGACTGAACAACAATCTATGGAGGCCTATTTGCGTGATATTAAGAGAATTGCTGATGCCTTAGCGTCTATTCGTAGTCCGGTTGTTAATGAAGATCTAGTTCAATATACTCTTTTGGGTTTTCCCTCTGAATATGACACTCTGGGACTGTACTGTTGCATCAACCTGGCACTCTTGTTTTTGATGACTTACGTGCTAAATTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_4167.p2 GENE.S_Transcript_4167~~S_Transcript_4167.p2 ORF type:complete len:306 (+),score=28.00,UBN2_3|PF14244.2|1.4e-13,UBN2|PF14223.2|6.2e-11,UBN2_2|PF14227.2|7.8e-09 S_Transcript_4167:55-972(+)
MASGPPNSASPDTTQPSSPPFISQPPITTPISNPTLSFSPPHPEGLSAPPLSWVFSQPSIPQNLFPNSVFEHGESSQSRPPPPFSVAIGSGSLGPHLLGGFSPSISGHAFPPVSAPNVTNIVTTTLTSVDDFLSWRTQFSAFLISQGLAGYVDGSIPPPVQSFVDSFGVVRYNPEYSSWLRYDQSVRCWLYTTLSKELLVEFHDIQHSYEIWSRLHNRFNTDSLARSIELKRSLTMIKKTEQQSMEAYLRDIKRIADALASIRSPVVNEDLVQYTLLGFPSEYDTLGLYCCINLALLFLMTYVLN*

Click here to download the sequence:
Link to NCBI Protein BLAST