Transcript Information: S_Transcript_417915.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value9E-05
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.82520934062575
Replicate 20.68411750565937
Replicate 30.571867785538
Condition 2: 8 Hour
Replicate 10.82656551616795
Replicate 20.17342518325369
Replicate 30.33047825744157
Condition 3: 24 Hour
Replicate 10.50802054629289
Replicate 21.5811961564893
Replicate 30.78207889628267


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_417915.p1 GENE.S_Transcript_417915~~S_Transcript_417915.p1 ORF type:5prime_partial len:129 (+),score=1.12,UBN2|PF14223.2|2.3e-10,Retrotrans_gag|PF03732.13|1.1e-08,UBN2_3|PF14244.2|2.5e-08,UBN2_2|PF14227.2|4.9e-06 S_Transcript_417915:3-389(+)
GCCATGTATGCTCTCACTATCTCTATAAAAGATGATTTGTTGTCTAAGATCAAAGAAACCAAGACACCCAAGGAGGCTTGGGATACGCTGTCAGCATTGTTCGAAAAGACGAGCGATGCACAACTACAACGACTCGAGAATGAGCTCCTGTCCGTCAAACAAGAAAGCATGACGGTGTCCCAATACTTTACTAAAGTAAAAACTTTATGTAAAGAAATCTCAAAGTTAGATAAAGAAAATCTCATCACCGACACCACAGAGTACAAAGAATTATTGTTCGCAGGTTACGATCAGAATTCAATAGTCTGGTTACGGATACACGTGGATGGGCCGCTCAACCAATCTTGGATGAGTTGGAAAATATTCTGGCCAATCAAGAATCTCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_417915.p1 GENE.S_Transcript_417915~~S_Transcript_417915.p1 ORF type:5prime_partial len:129 (+),score=1.12,UBN2|PF14223.2|2.3e-10,Retrotrans_gag|PF03732.13|1.1e-08,UBN2_3|PF14244.2|2.5e-08,UBN2_2|PF14227.2|4.9e-06 S_Transcript_417915:3-389(+)
AMYALTISIKDDLLSKIKETKTPKEAWDTLSALFEKTSDAQLQRLENELLSVKQESMTVSQYFTKVKTLCKEISKLDKENLITDTTEYKELLFAGYDQNSIVWLRIHVDGPLNQSWMSWKIFWPIKNL*

Click here to download the sequence:
Link to NCBI Protein BLAST