Transcript Information: S_Transcript_41844.p1


Annotated TAIR IDAT5G16620.1
Annotated Gene Namehydroxyproline-rich glycoprotein family protein
Annotated Gene Symbol(s)PDE120, TIC40, ATTIC40
Annotation TypeOrtholog
Chromosome Positionchr5:5450808-5454256 | Forward length=447
E-Value8.3E-105
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 130.932947327464
Replicate 231.922513147346
Replicate 333.263451854189
Condition 2: 8 Hour
Replicate 144.274758253607
Replicate 248.509699856081
Replicate 342.973432245714
Condition 3: 24 Hour
Replicate 130.512793172233
Replicate 228.29570062538
Replicate 329.720565351119


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_41844.p1 GENE.S_Transcript_41844~~S_Transcript_41844.p1 ORF type:complete len:499 (+),score=131.05,RPN13_C|PF16550.1|8.2e-06 S_Transcript_41844:283-1779(+)
ATGGAAAGTAATTTATCCTTAGTTTCTCCAAAACCAGTACTGGGTTTAACCCAATCACCTAAACCCACAACCTTTTCCAGCAGTAAACAACACTTTGGTATCCCTCTCCTCCCAAGAAAATCAACTGGGTCACTCTCATCTTCAACAAAACCCAGATCAAGAACCGTTCTTTTTGCTTTTAGAGGCCCAAGAAAACCTGTTCTTGAGAATGACAAGAATGGAAAAAGACTTGATGTATTTGCAAGTACTTCTAATAGCCGTACTACTACTCAGGAGACTACTTCAGTTGGCGTTAATCCTCCTCAGCCTTATCTTTCTACTCCTCCTCCTTCCCAGTTTGGGTCGCCTTTGTTTTGGATTGGAGTTGGTGTTGGCTTTTCTGCCCTCTTTTCTTTTTTGTCTGCCAGGGTTAAGGATTATGCAAGGCAACAAACTTTTAAGTTTTTGATGAACCAGGCTCCAAACAATCAATTTAGTAATGGACCCTTTTCTCCTGGTTCACCTTTCGGTTTCCCATCGCCATCTGCATCAGGACCAGGTGGTTCTGCTGGTTTTCCCTTCCAACAACCATCTACATCAGGACAAGGTGGTTCTGCTAGTTTTCCTTTCCAGCAACCATCAACATCAGGACCAAGTACTTCTGCTGGCCCCCCCTACCCATCACCAGCTACATCAGGACCAAGTACCGTCACTGGTTCCACTTGGGCGCCATCTTCAGCTTCTTCTTCTGGGCCAAATCAAGCCACTTCTTCCTCTCCTGCTGCTTCTGAAGCTGCAGTAGATGTGTCTGCAACCGAAGTTAAATCTGCAGAATCCAGGGCTGTCAAAGATGAAACTGACGTAAAGACTGAAGCAAAACGACCTGCCTTTGTGGATGTCTCTCCTGAAGAAACTTTACAAAAGAGTGCTTTTGAAGACTCTAGCGATTCGTCTTCACAAAAGCCTTCCATGGATGCTGAGTTTGCTGAGGTAGTACAAAATGGAGCTGCTTCAAAGGAGGCTTCAACTTCAAATGAAGGAATGAAAGGTTCTGGGTTGAATGTCGAAGCTTTGGAGAAACTGCTTGAAGATCCAACCATGCGCGAGATGATCTATCCACATCTGCCTGAGGAGATGAGAAATCCAGAAACCATGAAATGGATGCTACAAAATCCACTATATCGTCAACAGCTACAAGACATGTTGGACAACATGACTGGAGGCAGTGAATGGAACAACAAAATGATGGAAACACTAAAAGATTTTAACTTCGATAACCCTGAAGTAAAGCAACAATTCGATCAACTTGGTCTCACACCTCAAGAGGTTGTTTCTAAAATTATGGCCAATCCTGATGTTGCAATGGCATTCCAAAACCCCAGAGTTCAGCAAGCCATAATGGAGTGCTCACAGAATCCTATGAATATGGTCAAGTATCAAAATGATCAGGAGGTTATGGCCGTTTTCAATAAAATATCGCATCTTTTCTTTGGATCAGCTGGTCCTGGTGGATTCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_41844.p1 GENE.S_Transcript_41844~~S_Transcript_41844.p1 ORF type:complete len:499 (+),score=131.05,RPN13_C|PF16550.1|8.2e-06 S_Transcript_41844:283-1779(+)
MESNLSLVSPKPVLGLTQSPKPTTFSSSKQHFGIPLLPRKSTGSLSSSTKPRSRTVLFAFRGPRKPVLENDKNGKRLDVFASTSNSRTTTQETTSVGVNPPQPYLSTPPPSQFGSPLFWIGVGVGFSALFSFLSARVKDYARQQTFKFLMNQAPNNQFSNGPFSPGSPFGFPSPSASGPGGSAGFPFQQPSTSGQGGSASFPFQQPSTSGPSTSAGPPYPSPATSGPSTVTGSTWAPSSASSSGPNQATSSSPAASEAAVDVSATEVKSAESRAVKDETDVKTEAKRPAFVDVSPEETLQKSAFEDSSDSSSQKPSMDAEFAEVVQNGAASKEASTSNEGMKGSGLNVEALEKLLEDPTMREMIYPHLPEEMRNPETMKWMLQNPLYRQQLQDMLDNMTGGSEWNNKMMETLKDFNFDNPEVKQQFDQLGLTPQEVVSKIMANPDVAMAFQNPRVQQAIMECSQNPMNMVKYQNDQEVMAVFNKISHLFFGSAGPGGF*

Click here to download the sequence:
Link to NCBI Protein BLAST