Transcript Information: S_Transcript_420007.p1


Annotated TAIR IDAT3G19780.1
Annotated Gene NameLOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF179 (InterPro:IPR003774), Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF179) (TAIR:AT1G33780.1); Has 74 Blast hits to 72 proteins in 32 species: Archae - 0; Bacteria - 24; Metazoa - 11; Fungi - 3; Plants - 32; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:6870238-6874677 | Forward length=1059
E-Value1.2E-226
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.550988971153
Replicate 22.4695629384452
Replicate 31.0748310576011
Condition 2: 8 Hour
Replicate 13.0183022373
Replicate 23.0836313111186
Replicate 34.1606326037475
Condition 3: 24 Hour
Replicate 12.0410113159575
Replicate 21.7611102427504
Replicate 32.053228406707


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_420007.p1 GENE.S_Transcript_420007~~S_Transcript_420007.p1 ORF type:complete len:1081 (+),score=215.05,DUF179|PF02622.11|1.3e-12,Thioredoxin|PF00085.16|5.7,Thioredoxin|PF00085.16|0.0097,Thioredoxin|PF00085.16|8.9 S_Transcript_420007:55-3297(+)
ATGGTAGTTTTAAATTTGTTCGCTCCGTTCGCTGCAGTGGTGATTATCCTGCATCTTACCATTCATGCTAGTATCGCTACAGTTGACTCCGAATTGAATGTCGATAATCAGTTCGAATGGCAAATACTTTCTGCAAAAAATTTCTCCCATCAGATCCGTCTTCACCCTCACATTCTCCTGATCGTCACTGAACCCTGGTGTGGGGAATCTCGATCTCTGATGAGGGACATATCTCAGGGATTGGCTAAAAAGGCACAGCAGTATGACTCCTTGAAGCTAATGATCATACATCGTAATCGTGATAGGGTACTGGCAGATTCACTTGATGCTTCAGAGGGAATTACAGTTCTGTGTTACTGGCATGCTGTGCCTTATAATTATCTGGGAAGTCTTAGAGCTAAAGATATATTATCCTCCATCCATTATTTAATATCTCTTGCACCTGAAGACCTTCCTTTTGTACGACTTGGTGATGCCAAGGACTTGAAAACATTTCTCGCATCAACTGATAAAGCTGTTCTTCTCCTAGAATCTTGTGGATGGACCTCAATACTGATGGCACAGCAGACTGGGAATATCACCGTGCAAGGTGGTTTGAATAAAGAAACTAATAGAACATTGGCATCTCGAAGGCAGAAAACCTTGAAGGGCATGGCAAACGAAGTGAACTGTGAGGTTGAAGATGGTTGTGTTGGAAGTCCATGGGTTGGAGAATTTAGCGCCGAAAATGCTACAGCTTTTTCAACAAATGAGGATGAGCAGCCTACATTTGGAATGTCCTGCAGCTTTGAAGAATATAAGAGATTTGAGTCTTTCTTTCCCAAGTTCGTGGCCGCCGCAAGGGCTATCTATCTTCCCCCTCAAAGGCAAAGATATGGTATTCTTTCTGAGAGGTTGTCGCTTTCACCTCTTGGTGTTGATGTGTCTGATGGATGGGCATTGATAATTTCCTATGCGGGATGTCCTGGATGCTTGAAGATTCTCAAGGCAGAGGATCATCTCCAGGAGGCTCTGGAGATTGATGATGTACCTGTATTGGAGTTGGAAGATGAAAGAAACGATCATGGACCTGCTTTACCTGTGGATAAACCATCGATACTACTCTTTGTGGATAGGATGTCGGACTCCTCTGACACTAGAAGAACAAGTCAGGAAGCACTTCATGCATTTAAAGAAGTAGCAATGCAGCATTGGAAGCCATGTCAGGCTGATGGGCAAAATAGTGGTTGTTCAAAAAGATCCTCACTCCACAAGTATCAAAAGCCAGCTATTATGGTGGGGAATGATAGATCATTGTTCTCATCTTTGCCTCACAAGAAGGATAAGATGTCTATCATGATCGTAAATGATGGAAAATATGTTACTTTCAATAATGAGGTCTTAAATTTACAAAGTGGTTCCTTACACGAGGTTTTGACATATTTGCTAAAGAAGAAGAAGCCATCGAAGTTGAGCTCTCTTGTAAAGGAGGCAGGCTTCCAACTTCTTTCGAATGATGTAGACATAAAAATAGAAGATATGATGTCATCTCAGGATGAAAGCCAAGAGCAGGAATCAGAAGCAAGGTCAGTTCAAGACTCTGACAAAGATGTGGCTGACATGAATCAGGATGAAAGTGGTAAAATTTTAGCCATGGCAGAACGGGAGGAACACACTCAAGTTGTTAATAGTGAAGGTGCATATAATGGTGAAAAAAAGAGAGCTTCAAAAGACCTTGCAAGTAAAGAATCTGCTTTTGTGGGTTCTCATCAATCTCCCAATGTTCATGAAGTTGCTTCTACTGTAGACTTAGATTCTAAGGTACAAGCTTATGTACTAGCAGACAAGTCAGAAGGACTGAGCCATCCCTTTAGCAGTTTCACTGGTTCATTTTTCTTTTCAGATGGGAACTATGGGTTCCTTAAACGTGTCACTAATGACTGGGAAATCCCAACAATTGTGCTAATTGATCCGATCTCCCAGCAGCATTATGTCTTCGCGAAAGGAGCAAATTTCACTGTTTCTTCTATGTCTAGTTTTCTTGATGGGTTTCTTAATGGAATGCTTGTTCCTTATCAACGCTCTGGACCGCTGCACAACTCTGTTGAAAGGACACGTCCCCCATTTGTTAATTTGGATTTTCATGAACAAGATTCTATCCCTAGTGTTACAACCAAGACCTTTTCTGAATTAGTTCTTGGTTCTGACCAATCTGATGCTCAAAATGCAACCAATGCTTGGCATGAGGACGTACTGTTGCTTCTGAGTAGTAGCTGGTGTGGATTTTGTCAGAGAATGGAGTTAGTTGTTCGTGAAGTATATCGGGCCATAAAGGGCTACATGAACACAACCAAGTATGAGGCAACAAGCAAGGAGTGGTTATCTCATGATGACTTGAAGGATCTTATAACAAAGCTGCCGGTAGTCTATTCAATTGATTGTACTTTGAATGAGTGTGGCTGGATCCTTAATTCAGTGGGCCAAACTGAAGTTTATCCAACCCTACTCCTCTTTCCAGCAAAGAAGAAGACAGCTATCCCTTACAATGGAAACGTGATGGTCACAGACATTATCAAATTTATAGCAAACCATGGAAGTATTTCAAATCATCTTGCCAAGCAGAAGGGAGACATTTGGATTGATGGGGAAGAGATGGCTAATCAAGACAACAGGAAATATGAATTTATGAATGGAGGTAGCAAGGAATCTACTGATGAGCAGAATGTGGAGTCCCTTGTGAAAAATGGGAAGTTTAAAAATGAAGTCATATTGGAGCTGAATGAACCTGCCGGTCCACAAGGCTTGCCTGTTGGCTCCTTTCTTAGTGCCATGAATGATATTAGTCCATTCAGTAAAGCTAGAGTTCTTATAGTGAGTGCTGATCAAAATATGGGGTTTCAGGGGCTCATACTTAACAAGCCTATTAGCTGGGACTTCGTACTGGAATTTGAAAATGTTGAACTGCTAAAAGACGTTCCACTTTTTTGGGGGGGGCCAGTCGTACATGAAGGAATGCCTCTTGTTTGCTTAACCAAGAGCTCTATGAATGGTCAGTATCCACAAGTTCTTCCTGGTGTGTATTTTATTGATCAATTGGCAACAGTTAATGAAATAGAGCTAGTTAAGGCAGGAATTCGATCTGCGATGGATTATTGGTTCTTTTGGGGTTACTCTGGCTGGACATGGGACCAACTTTTTAATGAGATGGCTACTGGAGTGTGGAGCCTCCAAGATGGGAACATGGTAGACTTACAGTGGCCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_420007.p1 GENE.S_Transcript_420007~~S_Transcript_420007.p1 ORF type:complete len:1081 (+),score=215.05,DUF179|PF02622.11|1.3e-12,Thioredoxin|PF00085.16|5.7,Thioredoxin|PF00085.16|0.0097,Thioredoxin|PF00085.16|8.9 S_Transcript_420007:55-3297(+)
MVVLNLFAPFAAVVIILHLTIHASIATVDSELNVDNQFEWQILSAKNFSHQIRLHPHILLIVTEPWCGESRSLMRDISQGLAKKAQQYDSLKLMIIHRNRDRVLADSLDASEGITVLCYWHAVPYNYLGSLRAKDILSSIHYLISLAPEDLPFVRLGDAKDLKTFLASTDKAVLLLESCGWTSILMAQQTGNITVQGGLNKETNRTLASRRQKTLKGMANEVNCEVEDGCVGSPWVGEFSAENATAFSTNEDEQPTFGMSCSFEEYKRFESFFPKFVAAARAIYLPPQRQRYGILSERLSLSPLGVDVSDGWALIISYAGCPGCLKILKAEDHLQEALEIDDVPVLELEDERNDHGPALPVDKPSILLFVDRMSDSSDTRRTSQEALHAFKEVAMQHWKPCQADGQNSGCSKRSSLHKYQKPAIMVGNDRSLFSSLPHKKDKMSIMIVNDGKYVTFNNEVLNLQSGSLHEVLTYLLKKKKPSKLSSLVKEAGFQLLSNDVDIKIEDMMSSQDESQEQESEARSVQDSDKDVADMNQDESGKILAMAEREEHTQVVNSEGAYNGEKKRASKDLASKESAFVGSHQSPNVHEVASTVDLDSKVQAYVLADKSEGLSHPFSSFTGSFFFSDGNYGFLKRVTNDWEIPTIVLIDPISQQHYVFAKGANFTVSSMSSFLDGFLNGMLVPYQRSGPLHNSVERTRPPFVNLDFHEQDSIPSVTTKTFSELVLGSDQSDAQNATNAWHEDVLLLLSSSWCGFCQRMELVVREVYRAIKGYMNTTKYEATSKEWLSHDDLKDLITKLPVVYSIDCTLNECGWILNSVGQTEVYPTLLLFPAKKKTAIPYNGNVMVTDIIKFIANHGSISNHLAKQKGDIWIDGEEMANQDNRKYEFMNGGSKESTDEQNVESLVKNGKFKNEVILELNEPAGPQGLPVGSFLSAMNDISPFSKARVLIVSADQNMGFQGLILNKPISWDFVLEFENVELLKDVPLFWGGPVVHEGMPLVCLTKSSMNGQYPQVLPGVYFIDQLATVNEIELVKAGIRSAMDYWFFWGYSGWTWDQLFNEMATGVWSLQDGNMVDLQWP*

Click here to download the sequence:
Link to NCBI Protein BLAST