Transcript Information: S_Transcript_42060.p1


Annotated TAIR IDAT5G42070.1
Annotated Gene Nameunknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16819118-16820119 | Reverse length=164
E-Value0.0009
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 120.286959957965
Replicate 217.903411198311
Replicate 319.198585923092
Condition 2: 8 Hour
Replicate 114.333459065614
Replicate 212.652930788042
Replicate 315.37536548556
Condition 3: 24 Hour
Replicate 125.246955509621
Replicate 227.122266312678
Replicate 328.736591576321


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_42060.p1 GENE.S_Transcript_42060~~S_Transcript_42060.p1 ORF type:3prime_partial len:122 (-),score=36.86 S_Transcript_42060:2-364(-)
ATGAAGGCCCTGGTATCAGTGCCTTCATCACAATCAACCGCTTCTTTCTTATTTTCTCGCCATTGTTACAGCTACAATTCTTGCATCTTGCCATGTCAAATTTCAGTATCAAGGACCACCCACCTCAAGCAGAGACTCTCCCCTTTCATTACTCTCTCTTCTACCTCATCTTCAACCTCCTCTGTAGTTGAACAACAACAAGAAGCTGAGGATTCTTCTCTTGCTTCCTCCCCTCCACTTGTTGAGCCTATTGATGTTGAGGATGAAGCTGACTCTGATGCCTATGCTGCTTCTCTCAGTGGCTGCAAGGCATGTGGTAGAGAGCAGATCGAAAGAGGCTTCAATGGTGAGGGTAGGATCCAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_42060.p1 GENE.S_Transcript_42060~~S_Transcript_42060.p1 ORF type:3prime_partial len:122 (-),score=36.86 S_Transcript_42060:2-364(-)
MKALVSVPSSQSTASFLFSRHCYSYNSCILPCQISVSRTTHLKQRLSPFITLSSTSSSTSSVVEQQQEAEDSSLASSPPLVEPIDVEDEADSDAYAASLSGCKACGREQIERGFNGEGRIQ

Click here to download the sequence:
Link to NCBI Protein BLAST