Transcript Information: S_Transcript_42252.p2


Annotated TAIR IDAT2G30105.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT5G07910.1).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:12849855-12851908 | Forward length=367
E-Value8E-63
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 117.064825219505
Replicate 214.820805198941
Replicate 313.515287511646
Condition 2: 8 Hour
Replicate 120.674233360885
Replicate 224.762733227178
Replicate 322.454862362499
Condition 3: 24 Hour
Replicate 115.341444894158
Replicate 217.473625719169
Replicate 311.552081406923


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_42252.p2 GENE.S_Transcript_42252~~S_Transcript_42252.p2 ORF type:complete len:131 (+),score=23.60,LRR_8|PF13855.2|7.4e-05,LRR_8|PF13855.2|1.4e-08,LRR_4|PF12799.3|0.00036,LRR_4|PF12799.3|0.00012,LRR_1|PF00560.29|6,LRR_1|PF00560.29|63,LRR_1|PF00560.29|0.017,LRR_1|PF00560.29|1.2e+03 S_Transcript_42252:1735-2127(+)
ATGGGCTCTCTGACTCACCTGGAGATTTTAAAAGTTAACAATAACAGGATAACCTCCATACCTGCTTGCATAGGTGACTGCAGCTCTTTAATTGAGGTTGATCTTTCTTCGAATCTTCTTGTAGAGTTACCTGAAACATTTGGCAGGCTACAGAATTTGAAGATCTTGCATCTCAGTAACAACGGACTTAAATCACTCCCATCTGCTCTATTCAAAAAGTGTCTCAGGCTCTCAACTCTTGATCTCCATGGAACAGAAATTACAATGGATACCCTCCGTCAGGCCGAGGGATGGGAAGATTTTGATGAGCGGCGACGCTTGAAATATCAGAAGCAACTTGATTTTCGTGCTGGTGGCTCTGCTGAATTTGATGAAGGTGCTGATAAAAACTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_42252.p2 GENE.S_Transcript_42252~~S_Transcript_42252.p2 ORF type:complete len:131 (+),score=23.60,LRR_8|PF13855.2|7.4e-05,LRR_8|PF13855.2|1.4e-08,LRR_4|PF12799.3|0.00036,LRR_4|PF12799.3|0.00012,LRR_1|PF00560.29|6,LRR_1|PF00560.29|63,LRR_1|PF00560.29|0.017,LRR_1|PF00560.29|1.2e+03 S_Transcript_42252:1735-2127(+)
MGSLTHLEILKVNNNRITSIPACIGDCSSLIEVDLSSNLLVELPETFGRLQNLKILHLSNNGLKSLPSALFKKCLRLSTLDLHGTEITMDTLRQAEGWEDFDERRRLKYQKQLDFRAGGSAEFDEGADKN*

Click here to download the sequence:
Link to NCBI Protein BLAST