Transcript Information: S_Transcript_42260.p1


Annotated TAIR IDAT2G30105.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT5G07910.1).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:12849855-12851908 | Forward length=367
E-Value6.4E-92
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.0032442322139
Replicate 24.7655625444232
Replicate 35.4590498807458
Condition 2: 8 Hour
Replicate 18.7860608106588
Replicate 28.2328402994194
Replicate 38.3558122611527
Condition 3: 24 Hour
Replicate 14.9806334358555
Replicate 24.3514518226587
Replicate 37.0621724334325


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_42260.p1 GENE.S_Transcript_42260~~S_Transcript_42260.p1 ORF type:3prime_partial len:250 (+),score=47.66,ubiquitin|PF00240.19|7.6e-16,ubiquitin|PF00240.19|3e+03,LRR_8|PF13855.2|2.4e-05,LRR_8|PF13855.2|4.8e-06,LRR_4|PF12799.3|5.2e+03,LRR_4|PF12799.3|0.016,LRR_4|PF12799.3|0.00013,LRR_4|PF12799.3|0.00011 S_Transcript_42260:178-924(+)
ATGGAAGAGGAAAAGGTGAAGGTACAGATCAAATTCGGAGGGGAGACAATATCTGTGAGTGTCTCCCCGGATTCAACCATCTCTGACCTCAAATCCCATCTCCAACCCCTCACCAATGTCCTTCCTCGTGGCCAAAAGCTTATTCACAAAGGCAAGTTTCTTGTGGATTCTAACACCTTGAGATCATCTCACATCATTAATGGCTCCAAAATCATGCTCATGGCTTCTCAGGGCCTTCACCAAGGCGAGGGTCCCAAGCTCAAGGATGCTCCTGTTGTTTCCAATTATCGGAGAATTATGAATGTAGACAGAAAGCCTAACCAACCCATCCAACAAGTACCAGTGGTGGTTAAGACCAGAACTGAGCGTTGGAAGACCACTGGGGTTGTTGCCCTCTCCCAATCCCATTTGCAAGCTATACCTGATGAAGTATGGGATTGTGGGTCTTCTGCTAGAGTTCTTGATCTCAGCAACAACCTTATATGTGATGTACCCATCAAAATTGGCTGCCTGACATCAATCCAGAAATTAATCTTGAACTCAAATAAAATCTCTGATGATTCAATCAGTTGGCAAGGTCTGACTGAGTTGAAGAGTCTAACATATCTTTCTTTGAACCAAAACCATTTGACATATTTGCCGCCATCCTTGGCTTCACTCACTTTGCTGGAGCAGCTGCATGTTGCAGGCAATAAATTAGGAAGTCTTCCAATAGAAATGGGTTGTCTGACTCACCTGGAGATTTTA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_42260.p1 GENE.S_Transcript_42260~~S_Transcript_42260.p1 ORF type:3prime_partial len:250 (+),score=47.66,ubiquitin|PF00240.19|7.6e-16,ubiquitin|PF00240.19|3e+03,LRR_8|PF13855.2|2.4e-05,LRR_8|PF13855.2|4.8e-06,LRR_4|PF12799.3|5.2e+03,LRR_4|PF12799.3|0.016,LRR_4|PF12799.3|0.00013,LRR_4|PF12799.3|0.00011 S_Transcript_42260:178-924(+)
MEEEKVKVQIKFGGETISVSVSPDSTISDLKSHLQPLTNVLPRGQKLIHKGKFLVDSNTLRSSHIINGSKIMLMASQGLHQGEGPKLKDAPVVSNYRRIMNVDRKPNQPIQQVPVVVKTRTERWKTTGVVALSQSHLQAIPDEVWDCGSSARVLDLSNNLICDVPIKIGCLTSIQKLILNSNKISDDSISWQGLTELKSLTYLSLNQNHLTYLPPSLASLTLLEQLHVAGNKLGSLPIEMGCLTHLEIL

Click here to download the sequence:
Link to NCBI Protein BLAST