Transcript Information: S_Transcript_424424.p1


Annotated TAIR IDAT4G29090.1
Annotated Gene NameRibonuclease H-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:14333528-14335255 | Forward length=575
E-Value7E-42
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.5125115722295
Replicate 20.79115551187299
Replicate 30.82355925677783
Condition 2: 8 Hour
Replicate 10.27414236537586
Replicate 20.12109255014737
Replicate 30.44708476032099
Condition 3: 24 Hour
Replicate 10.59120117701202
Replicate 20.73603718245242
Replicate 30.87031411682065


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_424424.p1 GENE.S_Transcript_424424~~S_Transcript_424424.p1 ORF type:complete len:1478 (+),score=145.44,RVT_1|PF00078.23|1.8e-45,RVT_3|PF13456.2|1.8e-15,zf-RVT|PF13966.2|3e-15,zf-RVT|PF13966.2|1.6e+04,Exo_endo_phos|PF03372.19|9.3e-13,Exo_endo_phos_2|PF14529.2|6e-06,Exo_endo_phos_2|PF14529.2|1.2e+04 S_Transcript_424424:111-4544(+)
ATGGCGAGACCCCACCCACCACATCTTCTGACCAATCTACCGACCCGCCCGATCGAACACGAGTGGGCGGTCGTGGTCACCCATCCAACGAATTTGCCGGCGATGGGAGCCCTTCCCAAACTGGCCAACAAGATGATCGTCGAATTCAAGACAATCCCGATCAATGCATCTCCTCAGGAACTCTTATGCCTGGTCTCAATGCCAACTCCCATGCAGGGGGCCCTGTTTCGGCTCAGTAGTGCCTTTGTAGGCCACCCTCTTTACTCATCAGTTAACATGAATAATAGGTACCCCGACCTCATTCCCTCACTACACCAAATGAACATCATGGTGTGGAACGTGCGCGGCGCTGGAAGCAGAGATTTTTTAAATACTCTCAATGAGTTAATTAGACTTCATGACCCCAAAGTTCTTGCCTTGGTGGAAACCTGGATAAGTGGGGAGCAAGCTGACCGAGTTTGTGCCCGGATCAACTATGATGGAAAGCTGAGAGTTGAAGCCCAAGGCTTTAGAGGAGGAATCTGGCTCTTTTGGAAGACCACGGAAGTCTTCGTTGTGCCCCTTTTACTTGACCCCCAACATATAACAGTTGAGGTCTCACGAAGAGGGGAAGACCCGTGGGTATTCTCGGCAATCTATGCTAGCCCAACCCCAGCTAACAGACAACACCTTTGGTCTGACCTCCAGGAGTTCGCTCGGTTGAATAACAGGCCTTGGCTTCTCGTTGGGGATTTTAATGAAACCCGCCACCTCTCTGAAAGATCTGGAAACTCGGAGGGCATGTCACGCCGATGCCGACAATTTGATGAATGGATTGAAGAGATGCAACTCATTGAACTTGGTTTTACAGGACCAAAGTTTACGTGGAGCAGGGGGAACACACCCGAAACCCGCAAATGTGCGCGTCTCGATAGAGCTTTAAGCAACCTTTCATGGAGAGGGAGATATGAAGAGGCTGCTGTTCGCCATCTTCTAGCCAACCGATCTGATCATACCCCCTTACTGATAAGTCCCTTTGGTTTCGTCCCAATCCCTACTATAGGGCGGCCTTTCCGCTTTCAAGCAGCGTGGCTCATGCATGAAGACTTCGATACTTTCCTCTCTACTAGTTGGAATTCCCATTGTCCCGCCCCAGAAGCTCTCCGTATCCTAGCACGAGACCTCGACAACTGGAACAAGGAAGTATTTGGAAATCTCTTTCGACGAAAGAGAAGAGCTTGGGCTAGACTGGAGGGTGTACAGTTAAAGCTGGCACAACGAACTACGCGCCACCTGCTCGAGCTTGAGTCACATCTCCGAAAGGAGGTGGACGAAGTCTTAGAGCAACTTCACCTTTTTTGGGTCCAAAAGGCAAGGGCAGATGCACTACATGATGGTGATCGGAACACCAAGTACTTTCATGCTTCAACAATTATTCGACGAAAGAAGAATAGGATTGAAGGCCTGCAAAATGCTCTTGGTGTATGGGTCTGGGAACCTAATGCTCTTCAAGATATGGTCGTGGACTATTTCCAACTTTTATACAAGGAAGAGTCCCAACATGCGGGGCCTACCAGTCTCCCACGTAGTGCTTTTCCTAGCCTGCCCATCCACGACTATAACTCTCTGGCAAGGCCCTTCACTCATGATGAAGTCCAAACGTCAATTTTCAGCATGAGCCCACTGAAGGCCCCGGGACCAGACGGCTTCCAAGCACTCTTCTTCCAAAAGAACTGGGGTCTAGTAGGTGAGAGCGTCACTCGTTTGGTTCTGGGGGTTCTGAATGGGGCTACAACCCCAGAAGGCTTTAATGAAACTCTTCTTGTTCTTATTCCCAAGGTTGATAACCCAGAGAAAGTCACACAACTCCGTCCCATAAGCCTCTGCAACGTTATCTTCAAGGCGGCGACGAAGGCCATCGTTCATAGACTTAAACCACTGCTGCCCAACATGATATCTCCTTTCCAGTCAAGTTTTGTCCCTGATCGACAAATCTCGGACAATGTGGTGATAGTTCAGGAGCTCCTCCATACAATACGAACCAAAGGTAGAAATAAAGCACTGATGGCTGTCAAGATTGACCTTGAGAAGGCTTATGATCGCATTCGGTGGTCTTTCATTCGTGAGACTTTGACGGAGGTGGGCTTTCCTCAACACCTCGTTGAAGTTGTCATGAATTGTATATCTTCATGCAAAATGAAAGTAATGTGGAATGGCATCATGACGGACTCCTTTTGCCCTTCTAGAGGAGTACGCCAAGGTGACCCACTTTCACCATATATTTTTGTGCTTGCCATGGAACGGCTCTCGCACTTAATCAATGAAGCAGTCTCATCAGGTATTTGGGTCCCTTTGGAAACAAGCCCCGGAGGCCCTAAAATATCTCATATCTTCTATGCTGATGATCTAATTCTTTTTGGTGAAGCCACTGTCCATCAAGCCACCACTGTGGCCCAGTGTCTTTCTCGGTTTTGCGAAGCCTCAGGCCAGAAAGTTAGCTACAGCAAGTCCCAGCTGCTTCTCTCCAAAGCGGTTCAACGCCTCGCAAATACTTTAAGCGATACGCTTAATATTCCGATTGCGGAGAACTTTGGCAAATATCTAGGAATACCTGCTATTCATGGGCGGGTAACAAGGTCGAGTTTTCAGCATATCTTAGATAAAGTCAATGCAAGACTCTCCGGATGGAAGGCGCGGTGCCTTTCTATGGCGGGACGTGCTACCCTGACACAATCCGCCTTGTCCTGTGTGCCTTATTACTCAATGCAAACCAACCCGCTCCCTCGATCGGTATGTGATGAAATCGATAAAAAATGTCGAGGCTTTGTATGGGGGAGCACAGAGCAACGAAGGAAAATTCACCTCGTCAACTGGGAAAATGTCTCTAAGCCGAAGCATGAGGGTGGACTAGGTATCCGCTCAACCCGACAAGCCAATGCAGCTTTCTTGGCTAAATTGGGGTGGAGAGTGCTCAATGAGCCGTCGAACCTATGGTCCCGAGTGTTGCGCCACAAATATTGTGACGGGAGAAATGATATTGATATGTTCTCATCCCGACAAGATACATCTCATACTTGGCGTGGTATTTTGCATGGCGCCCCGTTGCTCAGGAAAGGGGTCATGATGTCTATTGGGGATGGCAACCGCACACTTTTCTGGCTCCACAACTGGGCGGATAACAACCCACTTATTGACATGACGCTAAGTGAACCTTCGGAATCTGATCTTGGACGCACAGTTGCTGAGTACTGGGGAGGCTCTTCTTGGAAGTGGGAGGAATTTTCGCACATGCTGCCAGCCAATGTGCTACAGAAAATTGCCTCACACTTTGTGTCTCCAGAGTCAAATATTTCAGATCATTTCTACTGGAGAGGTTCAAGATCAGGGGACTTCTCAATCAAATCTGCTATGGCAATTCTTCAAGAACAAAGCCCCTCCAACCCAAACCCACTCTGGAAAGATATTTGGAGAATTAAAGGCACTCAACGCATGAGGAACTTTATGTGGCTAGCCCTACATGAAAGTTTTCTCTGCAATGCTACTAGAGTTCGTCGTCACATCGCTGTCGATGCGTCTTGCCCGCAGTGCCCCGCCCCTATTGAAACCTGCCTTCATGTCTTGAGGGACTGTCCCATGGCCCGTGATCTTTGGAGGCGCTTGCGCCCCCCCTTTACTGATGAAGCATTCTTCTCGGGCAACATACAATCCTGGGTGGCTTCCAACATATCTGCCGCTGAACTGTGGCCCTCGTACTTTACTTTCATTTGCTGGTATCTTTGGAGGTGGAGGAACAACTCCCAGTTCCAACACCCTGAAGACACCCCCTTTGACAAGAAAGTTTTTATTTGCAACCGGGTCTTAGAATACCTGAGTATTGAAGAAAAGAAGACTTCACTGTATGCTTATGGTAAGCGTCAGCGCACTGAAACACTCATCCATTGGGAGTACCCACCTATGGATTGGGTTAAATTAAATACTGATGGTTGTGCCAAGGGTAATCCAGGACCGGCTGGCGCAGGAGGAGTACTTCGTTCTTCAGTGGGTGCTTTCTTGGGGGCTTTTGCAATGAAATGTGGCGTGTGTACTTCAATGAAAGCTGAGCTCTTGGGAATTCTAAGAGGATTGAAAATGGCTCGGGATCTGGGAATCTCGCAACTCATACTGGAAGTGGACTCTGAAGCCTCGGTTCAAACTTTGGGGTGTGATCCGGCTCCACACAATCCTAACTACCACATCATATTGCAATGCAGACTGCTCTTAAACTATGAGGGATGGGACGTTCGAATGAAGCATGTTTACAGAAAGGCAAATAGCTGTGCTGATTGGTTAGCCAATAAAGGACTCGAAGGCTCTCAAGAAGTAGTTGTTTTTAATTATCCTCCTATAGGCTTGCATGAGCTTTTGTATGCTGATTTGATGGGTCTTTCCAAGCCACGAAATGTAGTCATTCCTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_424424.p1 GENE.S_Transcript_424424~~S_Transcript_424424.p1 ORF type:complete len:1478 (+),score=145.44,RVT_1|PF00078.23|1.8e-45,RVT_3|PF13456.2|1.8e-15,zf-RVT|PF13966.2|3e-15,zf-RVT|PF13966.2|1.6e+04,Exo_endo_phos|PF03372.19|9.3e-13,Exo_endo_phos_2|PF14529.2|6e-06,Exo_endo_phos_2|PF14529.2|1.2e+04 S_Transcript_424424:111-4544(+)
MARPHPPHLLTNLPTRPIEHEWAVVVTHPTNLPAMGALPKLANKMIVEFKTIPINASPQELLCLVSMPTPMQGALFRLSSAFVGHPLYSSVNMNNRYPDLIPSLHQMNIMVWNVRGAGSRDFLNTLNELIRLHDPKVLALVETWISGEQADRVCARINYDGKLRVEAQGFRGGIWLFWKTTEVFVVPLLLDPQHITVEVSRRGEDPWVFSAIYASPTPANRQHLWSDLQEFARLNNRPWLLVGDFNETRHLSERSGNSEGMSRRCRQFDEWIEEMQLIELGFTGPKFTWSRGNTPETRKCARLDRALSNLSWRGRYEEAAVRHLLANRSDHTPLLISPFGFVPIPTIGRPFRFQAAWLMHEDFDTFLSTSWNSHCPAPEALRILARDLDNWNKEVFGNLFRRKRRAWARLEGVQLKLAQRTTRHLLELESHLRKEVDEVLEQLHLFWVQKARADALHDGDRNTKYFHASTIIRRKKNRIEGLQNALGVWVWEPNALQDMVVDYFQLLYKEESQHAGPTSLPRSAFPSLPIHDYNSLARPFTHDEVQTSIFSMSPLKAPGPDGFQALFFQKNWGLVGESVTRLVLGVLNGATTPEGFNETLLVLIPKVDNPEKVTQLRPISLCNVIFKAATKAIVHRLKPLLPNMISPFQSSFVPDRQISDNVVIVQELLHTIRTKGRNKALMAVKIDLEKAYDRIRWSFIRETLTEVGFPQHLVEVVMNCISSCKMKVMWNGIMTDSFCPSRGVRQGDPLSPYIFVLAMERLSHLINEAVSSGIWVPLETSPGGPKISHIFYADDLILFGEATVHQATTVAQCLSRFCEASGQKVSYSKSQLLLSKAVQRLANTLSDTLNIPIAENFGKYLGIPAIHGRVTRSSFQHILDKVNARLSGWKARCLSMAGRATLTQSALSCVPYYSMQTNPLPRSVCDEIDKKCRGFVWGSTEQRRKIHLVNWENVSKPKHEGGLGIRSTRQANAAFLAKLGWRVLNEPSNLWSRVLRHKYCDGRNDIDMFSSRQDTSHTWRGILHGAPLLRKGVMMSIGDGNRTLFWLHNWADNNPLIDMTLSEPSESDLGRTVAEYWGGSSWKWEEFSHMLPANVLQKIASHFVSPESNISDHFYWRGSRSGDFSIKSAMAILQEQSPSNPNPLWKDIWRIKGTQRMRNFMWLALHESFLCNATRVRRHIAVDASCPQCPAPIETCLHVLRDCPMARDLWRRLRPPFTDEAFFSGNIQSWVASNISAAELWPSYFTFICWYLWRWRNNSQFQHPEDTPFDKKVFICNRVLEYLSIEEKKTSLYAYGKRQRTETLIHWEYPPMDWVKLNTDGCAKGNPGPAGAGGVLRSSVGAFLGAFAMKCGVCTSMKAELLGILRGLKMARDLGISQLILEVDSEASVQTLGCDPAPHNPNYHIILQCRLLLNYEGWDVRMKHVYRKANSCADWLANKGLEGSQEVVVFNYPPIGLHELLYADLMGLSKPRNVVIP*

Click here to download the sequence:
Link to NCBI Protein BLAST