Transcript Information: S_Transcript_424425.p2


Annotated TAIR IDAT4G20520.1
Annotated Gene NameRNA binding;RNA-directed DNA polymerases
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:11045912-11047716 | Forward length=376
E-Value1E-19
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.40689570905253
Replicate 30.37792491974591
Condition 2: 8 Hour
Replicate 10.17479828128798
Replicate 20.18337580852235
Replicate 30.087360031167956
Condition 3: 24 Hour
Replicate 10.13429231654054
Replicate 20.37153789469422
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_424425.p2 GENE.S_Transcript_424425~~S_Transcript_424425.p2 ORF type:5prime_partial len:488 (+),score=46.64,RVT_1|PF00078.23|2e-46 S_Transcript_424425:1-1464(+)
CAATGCCTCACATCTTCCCCTCAAAACACGCCCTCAATACATCGTAATGCTCTTGGTGTATGGGTCTGGGAACCTAATGCTCTTCAAGATATGGTCGTGGACTATTTCCAACTTTTATACAAGGAAGAGTCCCAACATGCGGGGCCTACCAGTCTCCCACGTAGTGCTTTTCCTAGCCTGCCCATCCACGACTATAACTCTCTGGCAAGGCCCTTCACTCATGATGAAGTCCAAACGTCAATTTTCAGCATGAGCCCACTGAAGGCCCCGGGACCAGACGGCTTCCAAGCACTCTTCTTCCAAAAGAACTGGGGTCTAGTAGGTGAGAGCGTCACTCGTTTGGTTCTGGGGGTTCTGAATGGGGCTACAACCCCAGAAGGCTTTAATGAAACTCTTCTTGTTCTTATTCCCAAGGTTGATAACCCAGAGAAAGTCACACAACTCCGTCCCATAAGCCTCTGCAACGTTATCTTCAAGGCGGCGACGAAGGCCATCGTTCATAGACTTAAACCACTGCTGCCCAACATGATATCTCCTTTCCAGTCAAGTTTTGTCCCTGATCGACAAATCTCGGACAATGTGGTGATAGTTCAGGAGCTCCTCCATACAATACGAACCAAAGGTAGAAATAAAGCACTGATGGCTGTCAAGATTGACCTTGAGAAGGCTTATGATCGCATTCGGTGGTCTTTCATTCGTGAGACTTTGACGGAGGTGGGCTTTCCTCAACACCTCGTTGAAGTTGTCATGAATTGTATATCTTCATGCAAAATGAAAGTAATGTGGAATGGCATCATGACGGACTCCTTTTGCCCTTCTAGAGGAGTACGCCAAGGTGACCCACTTTCACCATATATTTTTGTGCTTGCCATGGAACGGCTCTCGCACTTAATCAATGAAGCAGTCTCATCAGGTATTTGGGTCCCTTTGGAAACAAGCCCCGGAGGCCCTAAAATATCTCATATCTTCTATGCTGATGATCTAATTCTTTTTGGTGAAGCCACTGTCCATCAAGCCACCACTGTGGCCCAGTGTCTTTCTCGGTTTTGCGAAGCCTCAGGCCAGAAAGTTAGCTACAGCAAGTCCCAGCTGCTTCTCTCCAAAGCGGTTCAACGCCTCGCAAATACTTTAAGCGATACGCTTAATATTCCGATTGCGGAGAACTTTGGCAAATATCTAGGAATACCTGCTATTCATGGGCGGGTAACAAGGTCGAGTTTTCAGCATATCTTAGATAAAGTCAATGCAAGACTCTCCGGATGGAAGGCGCGGTGCCTTTCTATGGCGGGACGTGCTACCCTGACACAATCCGCCTTGTCCTGTGTGCCTTATTACTCAATGCAAACCAACCCGCTCCCTCGATCGGTATGTGATGAAATCGATAAAAAAATGTCGAGGCTTTGTATGGGGGAGCACAGAGCAACGAAGGAAAATTCACCTCGTCAACTGGGAAAATGTCTCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_424425.p2 GENE.S_Transcript_424425~~S_Transcript_424425.p2 ORF type:5prime_partial len:488 (+),score=46.64,RVT_1|PF00078.23|2e-46 S_Transcript_424425:1-1464(+)
QCLTSSPQNTPSIHRNALGVWVWEPNALQDMVVDYFQLLYKEESQHAGPTSLPRSAFPSLPIHDYNSLARPFTHDEVQTSIFSMSPLKAPGPDGFQALFFQKNWGLVGESVTRLVLGVLNGATTPEGFNETLLVLIPKVDNPEKVTQLRPISLCNVIFKAATKAIVHRLKPLLPNMISPFQSSFVPDRQISDNVVIVQELLHTIRTKGRNKALMAVKIDLEKAYDRIRWSFIRETLTEVGFPQHLVEVVMNCISSCKMKVMWNGIMTDSFCPSRGVRQGDPLSPYIFVLAMERLSHLINEAVSSGIWVPLETSPGGPKISHIFYADDLILFGEATVHQATTVAQCLSRFCEASGQKVSYSKSQLLLSKAVQRLANTLSDTLNIPIAENFGKYLGIPAIHGRVTRSSFQHILDKVNARLSGWKARCLSMAGRATLTQSALSCVPYYSMQTNPLPRSVCDEIDKKMSRLCMGEHRATKENSPRQLGKCL*

Click here to download the sequence:
Link to NCBI Protein BLAST