Transcript Information: S_Transcript_425747.p1


Annotated TAIR IDAT5G01660.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Development/cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: DCD (Development and Cell Death) domain protein (TAIR:AT3G11000.1); Has 16133 Blast hits to 7053 proteins in 482 species: Archae - 40; Bacteria - 1227; Metazoa - 10756; Fungi - 311; Plants - 1896; Viruses - 673; Other Eukaryotes - 1230 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:244504-248442 | Reverse length=656
E-Value1E-11
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.38292088108173
Replicate 20.15872510473032
Replicate 30.39804466367483
Condition 2: 8 Hour
Replicate 10
Replicate 20.32189710272988
Replicate 30.30670284323714
Condition 3: 24 Hour
Replicate 10.47147230555239
Replicate 20.48914701243915
Replicate 30.18145355687134


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_425747.p1 GENE.S_Transcript_425747~~S_Transcript_425747.p1 ORF type:5prime_partial len:139 (+),score=15.41,Kelch_1|PF01344.21|0.054,Kelch_1|PF01344.21|0.019 S_Transcript_425747:3-419(+)
TTTGACGGAAATACAATGGTGTCCACTGTCGAAGTATTTGATCCGCTGTATGGGAAATGGATGATTGAGGCACCAATGAACCATGCAAGGGGATATTCAGCTGCAGCAGTATTGAGCAACTCATTGTATGTAATTGGAGGGGTGGAAGATTCTGAGAAAATTGCAGAAAAGGTAAGGTCTTTTCTTTCAGTCTTTCTCTTTCTTGTTCAGTGTTCTCAGCTCATCTGCATCATTTATCATTCATACTATGTCATTAGACTTCCCTCCTTTGCGTTGTCCTACGTTATGTGTAATGTCTTTGAAACATCATCATTAGATTTCCCCAACTTATCCACTCACTTATGGGCTTTTGTTTGTCCACTTGCTCTGGTTCAGTTTGAATTTTGCCCTTTTGTTCTCGAAGGGCTTTTAGACTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_425747.p1 GENE.S_Transcript_425747~~S_Transcript_425747.p1 ORF type:5prime_partial len:139 (+),score=15.41,Kelch_1|PF01344.21|0.054,Kelch_1|PF01344.21|0.019 S_Transcript_425747:3-419(+)
FDGNTMVSTVEVFDPLYGKWMIEAPMNHARGYSAAAVLSNSLYVIGGVEDSEKIAEKVRSFLSVFLFLVQCSQLICIIYHSYYVIRLPSFALSYVMCNVFETSSLDFPNLSTHLWAFVCPLALVQFEFCPFVLEGLLD*

Click here to download the sequence:
Link to NCBI Protein BLAST