Transcript Information: S_Transcript_426283.p1


Annotated TAIR IDAT5G41980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16793765-16794889 | Forward length=374
E-Value6E-41
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.8013685510716
Replicate 22.6852737290396
Replicate 32.5480095904975
Condition 2: 8 Hour
Replicate 11.8940313768506
Replicate 21.692606969453
Replicate 31.6127121543242
Condition 3: 24 Hour
Replicate 13.6647666382247
Replicate 22.6838724235148
Replicate 34.3972643206288


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_426283.p1 GENE.S_Transcript_426283~~S_Transcript_426283.p1 ORF type:5prime_partial len:304 (-),score=39.23,DDE_Tnp_4|PF13359.2|1.5e-18 S_Transcript_426283:365-1276(-)
GCACTGTCTTTGATAAGGAAGAGGAGAAAGCGACAAAGGGAGTGGGTTGTCCTAACAGTTGTGCTTGTTAATATAGCAACAGTGATGTATACAGCACTTCGGAGCTTACGTGCCACTGTTAATCAGATAAATCGCATGCAATATGAGAGAAAAGACAAGAAGCGTCAGAGAGTAGAAAATCTAGCAATGTTGATTAGAGAAAGTGATGTCATGTGTAAGAAGGAACTTCGAATGGATAGGAAGACCTTTTCTGTGCTATGTGAGATGGTTAGGGACATTGGAGGGTTGCGGGGAACTAGAAACATGCCTTTGGAAGAAATTGTCGCCATGTTTTTATACACATTAGCTCATAATAAGAACAATAGGTCGGTGGCAAGTTATTTTTCTAGGAGTGGAGAATCCGTAAGTAGACATTTCAATCGATGCCTCCTTGCGGTCTTGAAGTTGCATCGTGATTTGATGGTCAAAAGGCCTACACCCATGACTGAAGATTGTGAAGATGATACATGGAGATGTTTCAAGAATTGCTTAGGCGCTTTAGATGGAACTTACATTAAAGTCCGTGTTGGAAATGAGGATAGACCAAGATACCGAACAAAGAATGGCAATCTTGCTATGAATGTGTTAGGTGTATGTACACCTAACATGGAATTCGTTTTTGTATCCCCGGGTTGGGAAGGTTCTGCTGATGATGATCGCGTCCTTCAAGATGCTATTTCTAGAACTAACGGTTTAAAGGTGCCTCAAGGTTGTTATTATTTGGTTGATGCCGAATACACTAATTGTGAGGGGTTTCTTGCCCCTTATAGGGGTCACCGGTATCACCTAAAGGAATGGAGTTATCAGCCGCCTATGAGTGCAGAGGAGTGTTTCAACATGAAGCACGCTAAAGCTAGGAATGTAATAAGATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_426283.p1 GENE.S_Transcript_426283~~S_Transcript_426283.p1 ORF type:5prime_partial len:304 (-),score=39.23,DDE_Tnp_4|PF13359.2|1.5e-18 S_Transcript_426283:365-1276(-)
ALSLIRKRRKRQREWVVLTVVLVNIATVMYTALRSLRATVNQINRMQYERKDKKRQRVENLAMLIRESDVMCKKELRMDRKTFSVLCEMVRDIGGLRGTRNMPLEEIVAMFLYTLAHNKNNRSVASYFSRSGESVSRHFNRCLLAVLKLHRDLMVKRPTPMTEDCEDDTWRCFKNCLGALDGTYIKVRVGNEDRPRYRTKNGNLAMNVLGVCTPNMEFVFVSPGWEGSADDDRVLQDAISRTNGLKVPQGCYYLVDAEYTNCEGFLAPYRGHRYHLKEWSYQPPMSAEECFNMKHAKARNVIR*

Click here to download the sequence:
Link to NCBI Protein BLAST