Transcript Information: S_Transcript_42725.p1


Annotated TAIR IDAT1G09900.1
Annotated Gene NamePentatricopeptide repeat (PPR-like) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:3218133-3219929 | Forward length=598
E-Value8.1e-318
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 116.002307063617
Replicate 214.946914157279
Replicate 315.902002587481
Condition 2: 8 Hour
Replicate 125.749458324577
Replicate 228.35459584484
Replicate 325.461555404978
Condition 3: 24 Hour
Replicate 18.9574643810702
Replicate 210.138106961219
Replicate 38.7888809515396


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_42725.p1 GENE.S_Transcript_42725~~S_Transcript_42725.p1 ORF type:complete len:617 (+),score=99.38,PPR_2|PF13041.2|8.3e-05,PPR_2|PF13041.2|1.5e-12,PPR_2|PF13041.2|6.7e-09,PPR_2|PF13041.2|2.8e-15,PPR_2|PF13041.2|1.2e-17,PPR_2|PF13041.2|4e-18,PPR_2|PF13041.2|1.3e-15,PPR_2|PF13041.2|3.7e-14,PPR_2|PF13041.2|3.1e-15,PPR_2|PF13041.2|3e-15,PPR_2|PF13041.2|2.7e-16,PPR_2|PF13041.2|4.7e-12,PPR_2|PF13041.2|4.2e-16,PPR_2|PF13041.2|50,PPR_1|PF12854.3|3.2,PPR_1|PF12854.3|0.00042,PPR_1|PF12854.3|1.1e-13,PPR_1|PF12854.3|9.3e-10,PPR_1|PF12854.3|7.6e-08,PPR_1|PF12854.3|4.5e-17,PPR_1|PF12854.3|6.5e-09,PPR_1|PF12854.3|3.2e-13,PPR_1|PF12854.3|1.2e-06,PPR_1|PF12854.3|9.4e-13,PPR_1|PF12854.3|1.5e-10,PPR_1|PF12854.3|1.9e-10,PPR_1|PF12854.3|1.8e-07,PPR_1|PF12854.3|3.9e-06,PPR|PF01535.16|0.4,PPR|PF01535.16|0.0039,PPR|PF01535.16|1.3e-07,PPR|PF01535.16|0.00041,PPR|PF01535.16|0.00034,PPR|PF01535.16|1.1e-08,PPR|PF01535.16|0.00013,PPR|PF01535.16|4.8e-06,PPR|PF01535.16|3.5e-05,PPR|PF01535.16|6.3e-07,PPR|PF01535.16|1.7e-08,PPR|PF01535.16|1.5e-06,PPR|PF01535.16|2.3e-05,PPR|PF01535.16|0.0012,PPR_3|PF13812.2|4.5e+02,PPR_3|PF13812.2|2.4,PPR_3|PF13812.2|0.00015,PPR_3|PF13812.2|0.0035,PPR_3|PF13812.2|0.17,PPR_3|PF13812.2|0.0028,PPR_3|PF13812.2|0.012,PPR_3|PF13812.2|0.048,PPR_3|PF13812.2|0.076,PPR_3|PF13812.2|9.9e-05,PPR_3|PF13812.2|4.3e-06,PPR_3|PF13812.2|0.63,PPR_3|PF13812.2|0.00017,PPR_3|PF13812.2|4.1,ATP13|PF12921.3|6.9,ATP13|PF12921.3|12,ATP13|PF12921.3|2.8e+03,ATP13|PF12921.3|94,ATP13|PF12921.3|8.7,ATP13|PF12921.3|1.5e+02,ATP13|PF12921.3|6.3e+02 S_Transcript_42725:317-2167(+)
ATGGATGTAATGATACCAGTTAAGCAAACCCATGAAGGGTTTTGCTCATTTCGATGTATAGCAAGTAGTAGTAGTAGTATGCAAAGCAGTGGTTCAAGAAATAGAACTAGTACTAGGGTTCCTGCCAATTTTGGCTCCTGTAAGGTTTTTGGTGCCTCTAAGGTTGGTTCTTTGGATTTATCAGTTGATTTGAGGAAAGATTATGGGATTAGTAAACATAGTGAGAAGTGGGTTTGTGCTGTGTCCAAGAATGAACATTTTGCTATTAATGGTAGGGCTTCTCACCATGAGAGGCACTCTGGTGAGCATTTTAATGGTGAGAGTTCATCTATGGCTTCTTCCCATTCAAGCTATGATGAATTCGAGAGTAATAATTACCTTCGTCGATTGGTTAGGAACGGGGAGCTTGATGAAGGGTTTGAATTCCTGGAAAGTATGGTTTATCGCGGTGATATCCCTGATATCATTCCTTGTACCAGTTTGATTCGTGGGTTTTGTAGAATTGGTAAAACTAGGAAGGCCACTAGGGTCTTGGATATTCTTGAGGAATCTGGAGCTGTCCCTGATGTGATAACTTATAATGTTTTGATTAGTGGTTATTGCAAATCGGGGGAGATTAATAATGCGCTCAGGCTTCTTGACCGTATGAGTGTTGCTCCGGATGTTGTGACGTACAATACTATTTTGCGTTGTTTGTGTGATAGTGGGAAACTTAAGCAGGCAATGGAGGTTCTTGATCGACAGTTGCTAAGAGAGTGTTACCCAGATGTGATCACTTACACAATTTTGATCGAAGCAACTTGCAAGGAATGTGGAGTTGGTCAGGCAATGATGCTTCTAGATGAAATGAGGAGTAAAGGTTGCAAGCCTGATGTGGTCACCTATAATGTTCTTATTAATGGGATTTGTAAAGAAGGAAGATTAGATGAGGCAATAAAGTTTTTGAACAGCATGCCTTCCTTTGGTTGCCAACCTAATGTGATTACCCACAATATTATCTTACGAAGCATGTGTAGCACGGGAAGGTGGATGGATGCTGAGAAATTACTGTCTGATATGCTCAGTAAAGGCTGTTCTCCTAGCGTTGTCACCTTCAATATTCTGATCAATTTCTTGTGTAGGAAGGGCTTATTGGGTCGAGCAACTGACATGTTGGAGAAGATGCCAAAACATGGATGTACTCCAAATTCCTTGAGTTACAACCCATTGCTCCATGCATTCTGCAAAGAAAAGAAGATGGAAAGGGCGATTGAATACTTAGGCATAATGGTCTCTCGGGGGTGTTATCCTGATATAGTCACCTACAATACTCTGCTTACAGCCTTGTGCAAAGATGGGAAAGTTGATGTAGCTGTAGAGATACTGAATCAATTAAGTAGCAAGGGTTGCTCACCAGTTTTGATAACATATAACACTGTGATTGATGGGCTATCAAAGGTGGGCAAGACAGAACAAGCTATAAAGCTCCTGGATGAGATGCGGGGAAAGGGTTTGAAACCCGATATAATAACTTACTCTTCGCTTGTGTCAGGTCTCAGTAGAGAGGGGAAGATTGATGAAGCAATTAGGTTTTTCCATGAGATAGAAGGATTAGGTATCAGACCTAATACAATCACGTATAACTCCATCATGTTGGGACTGTGCAAAGCTCGCGATACTTCTCGTGCAATCGACTTCTTTGCTTATATGGTATCAAGAGGGTGCAAACCTACTGAAGCTACATACACCATCCTTATTGAGGGTATTGCATACGAAGGGCTAGCTAAGGAGGCTTTGGAGTTGCTGAATGAGCTGTGTTCTAGAGGATTTGTGAAGAAAAGTTCGGCAGAGCAGGTAGCCGTGAAGATGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_42725.p1 GENE.S_Transcript_42725~~S_Transcript_42725.p1 ORF type:complete len:617 (+),score=99.38,PPR_2|PF13041.2|8.3e-05,PPR_2|PF13041.2|1.5e-12,PPR_2|PF13041.2|6.7e-09,PPR_2|PF13041.2|2.8e-15,PPR_2|PF13041.2|1.2e-17,PPR_2|PF13041.2|4e-18,PPR_2|PF13041.2|1.3e-15,PPR_2|PF13041.2|3.7e-14,PPR_2|PF13041.2|3.1e-15,PPR_2|PF13041.2|3e-15,PPR_2|PF13041.2|2.7e-16,PPR_2|PF13041.2|4.7e-12,PPR_2|PF13041.2|4.2e-16,PPR_2|PF13041.2|50,PPR_1|PF12854.3|3.2,PPR_1|PF12854.3|0.00042,PPR_1|PF12854.3|1.1e-13,PPR_1|PF12854.3|9.3e-10,PPR_1|PF12854.3|7.6e-08,PPR_1|PF12854.3|4.5e-17,PPR_1|PF12854.3|6.5e-09,PPR_1|PF12854.3|3.2e-13,PPR_1|PF12854.3|1.2e-06,PPR_1|PF12854.3|9.4e-13,PPR_1|PF12854.3|1.5e-10,PPR_1|PF12854.3|1.9e-10,PPR_1|PF12854.3|1.8e-07,PPR_1|PF12854.3|3.9e-06,PPR|PF01535.16|0.4,PPR|PF01535.16|0.0039,PPR|PF01535.16|1.3e-07,PPR|PF01535.16|0.00041,PPR|PF01535.16|0.00034,PPR|PF01535.16|1.1e-08,PPR|PF01535.16|0.00013,PPR|PF01535.16|4.8e-06,PPR|PF01535.16|3.5e-05,PPR|PF01535.16|6.3e-07,PPR|PF01535.16|1.7e-08,PPR|PF01535.16|1.5e-06,PPR|PF01535.16|2.3e-05,PPR|PF01535.16|0.0012,PPR_3|PF13812.2|4.5e+02,PPR_3|PF13812.2|2.4,PPR_3|PF13812.2|0.00015,PPR_3|PF13812.2|0.0035,PPR_3|PF13812.2|0.17,PPR_3|PF13812.2|0.0028,PPR_3|PF13812.2|0.012,PPR_3|PF13812.2|0.048,PPR_3|PF13812.2|0.076,PPR_3|PF13812.2|9.9e-05,PPR_3|PF13812.2|4.3e-06,PPR_3|PF13812.2|0.63,PPR_3|PF13812.2|0.00017,PPR_3|PF13812.2|4.1,ATP13|PF12921.3|6.9,ATP13|PF12921.3|12,ATP13|PF12921.3|2.8e+03,ATP13|PF12921.3|94,ATP13|PF12921.3|8.7,ATP13|PF12921.3|1.5e+02,ATP13|PF12921.3|6.3e+02 S_Transcript_42725:317-2167(+)
MDVMIPVKQTHEGFCSFRCIASSSSSMQSSGSRNRTSTRVPANFGSCKVFGASKVGSLDLSVDLRKDYGISKHSEKWVCAVSKNEHFAINGRASHHERHSGEHFNGESSSMASSHSSYDEFESNNYLRRLVRNGELDEGFEFLESMVYRGDIPDIIPCTSLIRGFCRIGKTRKATRVLDILEESGAVPDVITYNVLISGYCKSGEINNALRLLDRMSVAPDVVTYNTILRCLCDSGKLKQAMEVLDRQLLRECYPDVITYTILIEATCKECGVGQAMMLLDEMRSKGCKPDVVTYNVLINGICKEGRLDEAIKFLNSMPSFGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLSKGCSPSVVTFNILINFLCRKGLLGRATDMLEKMPKHGCTPNSLSYNPLLHAFCKEKKMERAIEYLGIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTEQAIKLLDEMRGKGLKPDIITYSSLVSGLSREGKIDEAIRFFHEIEGLGIRPNTITYNSIMLGLCKARDTSRAIDFFAYMVSRGCKPTEATYTILIEGIAYEGLAKEALELLNELCSRGFVKKSSAEQVAVKM*

Click here to download the sequence:
Link to NCBI Protein BLAST