Transcript Information: S_Transcript_42847.p1


Annotated TAIR IDAT5G48850.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)ATSDI1
Annotation TypeOrtholog
Chromosome Positionchr5:19805576-19807699 | Reverse length=306
E-Value1.5E-142
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 121.845199710963
Replicate 214.373152806199
Replicate 318.743106378122
Condition 2: 8 Hour
Replicate 15.9044240291736
Replicate 24.8824555663247
Replicate 35.832349181819
Condition 3: 24 Hour
Replicate 19.4637443135147
Replicate 212.845287342946
Replicate 311.091127018536


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_42847.p1 GENE.S_Transcript_42847~~S_Transcript_42847.p1 ORF type:complete len:307 (+),score=58.91,TPR_1|PF00515.24|13,TPR_1|PF00515.24|4.1e+02,TPR_1|PF00515.24|0.0022,TPR_1|PF00515.24|0.46,TPR_11|PF13414.2|5.6,TPR_11|PF13414.2|9.5e-07,TPR_8|PF13181.2|4.5e+02,TPR_8|PF13181.2|87,TPR_8|PF13181.2|2.1e+02,TPR_8|PF13181.2|0.024,TPR_8|PF13181.2|1.7,TPR_12|PF13424.2|6.4,TPR_12|PF13424.2|3.6e+03,TPR_12|PF13424.2|0.39,TPR_12|PF13424.2|0.034,TPR_2|PF07719.13|6.8e+03,TPR_2|PF07719.13|79,TPR_2|PF07719.13|0.53,TPR_2|PF07719.13|0.053 S_Transcript_42847:160-1080(+)
ATGGAGAGTATTAGTATGAATTCAAAGAAGATAATGAGCAACAGCTACAACCCAGTTGGAGTTGTTGGAGAAACAGAGATGTTTCATGTCATTCACAAAGTCCCTTCTGGTGATGGCCCTTATGTTCGTGCCAAACATGCCCAGCTGGTTCAAAAGGATCCAGAAGCTGCAATAGTACTATTTTGGAAGGCGATAAATGCAGGGGATAGAGTAGATAGTGCTCTCAAAGACATGGCAGTGGTAATGAAGCAACTTGATAGGACTGAAGAAGCCATTGAAGCTGTCAAGTCTTTTAGGGGCCGTTGCTCCAAAAATGCACAAGAGTCCCTCGATAACGTCCTCATTGATCTTTATAAGAAATGTGGAAGAGTAGATGAACAAATTGAGCTACTAAGACAAAAGCTACGGATGATCTACCAAGGAGAAGCTTTCAATGGAAAACCAACAAAGACTGCAAGATCTCATGGCAAGAAATTTCAAGTTTCCATCAAACAAGAAACCTCTAGGATCCTGGGGAACTTGGGCTGGGCCTACATGCAAAAACCAAATTATATGGCAGCAGAAGTGGTGTACAGAAAGGCCCAAATGATCGATCCTGATGCCAACAAGGCCTGTAACTTGGGCTTATGTTTGATAAAACAGGCCCGTTACGAAGACGCCCGTTCAGTGCTTGAAGAAGTACTCAATTGCAAAGTTCCGGGCTCCGACGATATCCGGGCACGTAATCGGGCCGAGGAACTGCTATTGGACTTGGAATCAAGGCAGCCCCCTCCTGTCCTATCCAATCTTGTGGGCCTCCGTTTGGATGATGAGTTTCTTGATGGGCTTAAGCAGCTTGGAGCCCATTGGGTCCCTATTAGACCGAGACGGCTTCCCATTTTCGAACAAATATCCAACTTCAAAGATCAATTAGCTTGCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_42847.p1 GENE.S_Transcript_42847~~S_Transcript_42847.p1 ORF type:complete len:307 (+),score=58.91,TPR_1|PF00515.24|13,TPR_1|PF00515.24|4.1e+02,TPR_1|PF00515.24|0.0022,TPR_1|PF00515.24|0.46,TPR_11|PF13414.2|5.6,TPR_11|PF13414.2|9.5e-07,TPR_8|PF13181.2|4.5e+02,TPR_8|PF13181.2|87,TPR_8|PF13181.2|2.1e+02,TPR_8|PF13181.2|0.024,TPR_8|PF13181.2|1.7,TPR_12|PF13424.2|6.4,TPR_12|PF13424.2|3.6e+03,TPR_12|PF13424.2|0.39,TPR_12|PF13424.2|0.034,TPR_2|PF07719.13|6.8e+03,TPR_2|PF07719.13|79,TPR_2|PF07719.13|0.53,TPR_2|PF07719.13|0.053 S_Transcript_42847:160-1080(+)
MESISMNSKKIMSNSYNPVGVVGETEMFHVIHKVPSGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRTEEAIEAVKSFRGRCSKNAQESLDNVLIDLYKKCGRVDEQIELLRQKLRMIYQGEAFNGKPTKTARSHGKKFQVSIKQETSRILGNLGWAYMQKPNYMAAEVVYRKAQMIDPDANKACNLGLCLIKQARYEDARSVLEEVLNCKVPGSDDIRARNRAEELLLDLESRQPPPVLSNLVGLRLDDEFLDGLKQLGAHWVPIRPRRLPIFEQISNFKDQLAC*

Click here to download the sequence:
Link to NCBI Protein BLAST