Transcript Information: S_Transcript_42894.p1


Annotated TAIR IDAT2G20580.1
Annotated Gene Name26S proteasome regulatory subunit S2 1A
Annotated Gene Symbol(s)RPN1A, ATRPN1A
Annotation TypeOrtholog
Chromosome Positionchr2:8859211-8864699 | Forward length=891
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 146.149025605587
Replicate 249.253020710519
Replicate 347.662624090914
Condition 2: 8 Hour
Replicate 145.510050844384
Replicate 246.143500099369
Replicate 345.465869360793
Condition 3: 24 Hour
Replicate 142.908720867558
Replicate 246.036658598659
Replicate 344.356980886763


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_42894.p1 GENE.S_Transcript_42894~~S_Transcript_42894.p1 ORF type:complete len:895 (+),score=211.75,PC_rep|PF01851.18|0.0033,PC_rep|PF01851.18|0.00031,PC_rep|PF01851.18|0.00085,PC_rep|PF01851.18|0.35,PC_rep|PF01851.18|1.6e+02,PC_rep|PF01851.18|4.2e+03,PC_rep|PF01851.18|1.3e+02,PC_rep|PF01851.18|0.0033,PC_rep|PF01851.18|3.1e+02,HEAT_2|PF13646.2|2.1e+02,HEAT_2|PF13646.2|8.3e+03,HEAT_2|PF13646.2|1.2,HEAT_2|PF13646.2|0.0013 S_Transcript_42894:267-2951(+)
ATGGACCCCGAACCAAGCAACACCGGTGCCGGAGCCCCACCCGGTGGTCGAAAAGAAGCGACCACTAAAGTTCCGTCCAAAGACCCTAAGAAGAAGGACGAAAAAAGGGACGAAGATCTTTCAGAAGAGGATTTGGCGTTGAAGCAGCAATTGGAATTGTACGTTGAGCGAGTTCAGGATCCCGATCCTGGGTTGCAAAAAGTTGCTCTTGAGAGTATGAGGCAGGAAATCAGAACATCTACAAGTTCGATGACGTCTGTTCCAAAGCCTTTAAAGTTTCTTCGCCCTCATTATGGAACTCTGAAAGCGTATTATGAAACAATGAAGGACTCTGACCTAAAGAGATTCTTGGCCGACATACTTTCTGTTTTAGCATTGACCATGTCAGCAGAGGGTGAAAGGGAAAGTTTGAAGTACCGTTTGTTGGGCTCTGAAGGAGACATTGGTTCTTGGGGTCATGAATACGTCAGGAACTTGGCAGGAGAAATAGCTGAAGAATATGCAAAACGGCAGAATGAAGAAGCTCCAATTTATGATTTGATGGACCTTGTCCAACAAATTGTTGCATTTCATATGAAGCACAATGCTGAGCCTGAAGCAGTAGATCTTCTGATGGAGGTTGAAGACCTTGACTTGTTGGTTGAGCATGTTGATAAGACAAATTACAAAAGGACATGCTTGTATTTGACTGCTGCAGCAAAATACCTTCCTGGTCCAGATGATATGTTAGTTTTGGACATTGCATACACTATTTATTGCAAGTTTGAGGAGTATGCCTGTGCACTTCAGGTTGCACTGTTCTTGGACAACATGCAGTACATTAAGCAGATCTTCACATCATGCAATGATCTTCTACGTAAAAAGCAATTCTGCTACATCCTTGCTCGACATGAGGTGGCCTTCGAACTTGATGAAGAGATGGTTGCAGATGATGAAGATAGGGAGCAATTACAAGAAATCATCAATAACTCAAAATTAAGTGAATGCTATCTAACCCTTGCTCGTGACATTGAAGTCATGGAACCAAAGTCTCCAGAGGACATCTATAAGGCTCATTTACTTGATGGTCGAGCAAGTGCTGGTGCAACTGTTGATTCTGCAAGGCAAAACTTAGCAGCAACCTTTGTCAATGCATTTGTAAATGCTGGTTTTGGCCAGGACAAATTAATGACGATCTCAGCTGAAACCTCAACTGGTGCTTCCTCTGGAAACTGGCTGTTTAAGAACAAAGAACATGGGAAAACCAGTGCAGCAGCAAGTCTGGGTATGATCTTGTTGTGGGATGTTGATACCGGACTTGCGCAACTTGACAAGTACTTCCACAGTACTGATGCCCATGTTATTGCGGGGGCATTACTTGGTGTTGGTATTGTGAACTGTGGCATCAAAAATGATTGTGATCCAGCTCTGGCACTTCTGGGCGAGTATATCGACAAAGATGATGCTTCCATTCGAATTGGTGCCATTATGGGTTTGGGAATTACTTATGCTAACACACAAAATGAACAGATACGTAACAGGTTGACTCCAGTTCTTGGGGACACTAAAGCTTCTCTTGATGTCATTGCCTTCACTGCCATTTCTCTGGGTTTGGTATATGTTGGTTCCTGCAATGAAGAGGTTGCCCAGGCAATTATATTTGCATTGATGGATCGTAGTGAGTCTGATCTAGGGGAGCCACTTGCCAAGCTTCTGCCCCTTGGTCTTGGTCTTCTTTATCTGGGCAAACAGGAAAGCGTGGAGGCAACAGCAGAAGTGTCTAAAACTTTCAACGAGAAGATCAGAAAACATTGTGATATGACGCTGCTTTCTTGTGCTTATGCTGGAACTGGAAACGTGCTTAAGGTCCAAAGTTTGTTGGGTCATTGTGCTCAACATCTTGACAAGGGTGAAACCCATCAGGGTCCAGCTGTTTTGGGTATTGCTATGATAGCAATGGCTGAAGAACTGGGCCTGGAGATGGCAATTCGTTCATTGGAACATCTTTTGCAGTATGGAGAGCAGAATATTCGGCGTGCCGTTCCACTTGCTCTTGGTCTCTTGTGCATATCAAATCCGAAGGTAACTGTTATGGACACATTGAGTAGATTGAGCCATGATTCTGACTCAGAAGTAGCAACGGCTGCCATCATTTCTCTGGGTTTCATAGGTGCTGGTACCAACAATGCCCGGATTGCTGGCATGCTCAGAAATCTGTCAAGTTATTACTACAAGGATGCCAGTGCATTGTTTTGTGTTCGGATTGCTCAAGGTCTTGTTCATATGGGGAAGGGTCTTTTAACTCTCAATCCTTACCATTCTGACCGCTTCTTGCTATCACCGGTGGCTCTGGCTGGACTAGTAACTATGCTTCATGCATGTCTTGATATGAAAGCAATCATCTTAGGAAAATATCATTATGTTCTCTACTTCCTTGTCCTTGCAATGCAGCCAAGAATGTTGTTGACTGTGGATGAGAACCTGAAGCCCCTTTCAGTACCTGTTCGGGTGGGTCAAGCTGTTGATGTGGTTGGCCAGGCCGGTAGACCCAAAACCATAACAGGGTTTCAAACTCATTCAACCCCTGTTCTTCTCTCTGCTGGCGACAGGGCAGAATTGGCTACCGAAAAGTACCTTCCTTTGTCACCCATACTGGAGGGTTTCGTCATCTTGAAAGAAAACCCAGATTATAGGGAGGAGCACTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_42894.p1 GENE.S_Transcript_42894~~S_Transcript_42894.p1 ORF type:complete len:895 (+),score=211.75,PC_rep|PF01851.18|0.0033,PC_rep|PF01851.18|0.00031,PC_rep|PF01851.18|0.00085,PC_rep|PF01851.18|0.35,PC_rep|PF01851.18|1.6e+02,PC_rep|PF01851.18|4.2e+03,PC_rep|PF01851.18|1.3e+02,PC_rep|PF01851.18|0.0033,PC_rep|PF01851.18|3.1e+02,HEAT_2|PF13646.2|2.1e+02,HEAT_2|PF13646.2|8.3e+03,HEAT_2|PF13646.2|1.2,HEAT_2|PF13646.2|0.0013 S_Transcript_42894:267-2951(+)
MDPEPSNTGAGAPPGGRKEATTKVPSKDPKKKDEKRDEDLSEEDLALKQQLELYVERVQDPDPGLQKVALESMRQEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMKDSDLKRFLADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAEEYAKRQNEEAPIYDLMDLVQQIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDKTNYKRTCLYLTAAAKYLPGPDDMLVLDIAYTIYCKFEEYACALQVALFLDNMQYIKQIFTSCNDLLRKKQFCYILARHEVAFELDEEMVADDEDREQLQEIINNSKLSECYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGATVDSARQNLAATFVNAFVNAGFGQDKLMTISAETSTGASSGNWLFKNKEHGKTSAAASLGMILLWDVDTGLAQLDKYFHSTDAHVIAGALLGVGIVNCGIKNDCDPALALLGEYIDKDDASIRIGAIMGLGITYANTQNEQIRNRLTPVLGDTKASLDVIAFTAISLGLVYVGSCNEEVAQAIIFALMDRSESDLGEPLAKLLPLGLGLLYLGKQESVEATAEVSKTFNEKIRKHCDMTLLSCAYAGTGNVLKVQSLLGHCAQHLDKGETHQGPAVLGIAMIAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVTVMDTLSRLSHDSDSEVATAAIISLGFIGAGTNNARIAGMLRNLSSYYYKDASALFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPVALAGLVTMLHACLDMKAIILGKYHYVLYFLVLAMQPRMLLTVDENLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLSAGDRAELATEKYLPLSPILEGFVILKENPDYREEH*

Click here to download the sequence:
Link to NCBI Protein BLAST