Transcript Information: S_Transcript_429970.p1


Annotated TAIR IDAT5G06860.1
Annotated Gene Namepolygalacturonase inhibiting protein 1
Annotated Gene Symbol(s)PGIP1, ATPGIP1
Annotation TypeHomolog
Chromosome Positionchr5:2132373-2133434 | Forward length=330
E-Value1E-63
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.058367168141574
Replicate 30.048790307099472
Condition 2: 8 Hour
Replicate 10.1128327530007
Replicate 20.059184784761182
Replicate 30.056391131230109
Condition 3: 24 Hour
Replicate 10.34674418239038
Replicate 20.1199143469648
Replicate 30.06672498519872


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_429970.p1 GENE.S_Transcript_429970~~S_Transcript_429970.p1 ORF type:complete len:378 (-),score=22.34,LRR_8|PF13855.2|29,LRR_8|PF13855.2|0.013,LRR_8|PF13855.2|3.7e-08,LRR_8|PF13855.2|0.011,LRR_8|PF13855.2|0.0013,LRR_8|PF13855.2|0.016,LRR_4|PF12799.3|8.5,LRR_4|PF12799.3|0.098,LRR_4|PF12799.3|0.015,LRR_4|PF12799.3|0.0021,LRR_4|PF12799.3|0.019,LRR_4|PF12799.3|1.4,LRR_4|PF12799.3|0.07,LRR_4|PF12799.3|0.061,LRR_1|PF00560.29|3.6e+02,LRR_1|PF00560.29|27,LRR_1|PF00560.29|2.7,LRR_1|PF00560.29|0.45,LRR_1|PF00560.29|2.6,LRR_1|PF00560.29|26,LRR_1|PF00560.29|22,LRR_1|PF00560.29|1.1e+02,LRRNT_2|PF08263.8|1.2e-09 S_Transcript_429970:23-1156(-)
ATGCAAGGTAGTCCTCATATCTATTTCTATATTCTCATGCTATTTTTCACCTTATCATCAACTCAAAAATGCAACCCAAATGATGAAAAAGTGCTACTCAAGATAAAAGCTCACTTCAACAACGCCTTAGTTTTCACCACTTGGGATCCAAACACTACTGATTGCTGCACCTGGGGTGGTATCGAATGCAATTCTAACGGTGACGTCACCATGATCGGTATAGGAATCACTACTGATGTCATCCGCCAAATCCCACCTGTAATTGGAGAGCTCTCCAACCTTCAATACCTCCACTTGGAAGTCACTCCTGGGCTTACGGGCCCAATCCCTCTGGCTATTGCCAAGCTAACCAAACTCCAACACCTCCATTTCCCTATAAACAACCTCACGGGCCCAATCCCTGAATTCTTGACCCAACTTACGGATCTTGAGGATCTTGACCTCAGCTCAAATAGCTTCACTGGTCCACTCCCCTTAGGACCGGACCGGCTTACCAAGCTTAAAACCGTTAATCTCGGTTCAAACAAATTATCCGGTCCAATCCCCGACTCCTTGAGCCGGATCAAGAACCTCGACCAGCTCTACCTCTACGAAAATCTTTTCTCAGGCCCAATCCCGGCTTCTTTGTCTAAACTCCCTAGGCTCAACGAGCTTGACCTCCGCCAAAACCAGCTCACCGGTTCAATCCCAGCAAACTTCGGCTCGTTTCGAAACCCGGCCTTGAACCTTGACCTTTCCTTCAACAATCTTTCCGGTCCCATCCCGAGATCCTTCGGCAAAGCCCAGCTAACCCAATTGGATCTTTCTAACAACAAATTCACAGGGGATGCCTCGTTTTTGTTCGGAAGAGACAAAAGAGTGTTGAACACCATTGATTTGAGTAACAATCTTTTCAAGTTTGACTTCTCCAACGTTGGCATGCCCCCAAGCTTGAAGAATCTTGATATAAGCCACAACATGATATACGGGTCACTTCCAAGAACACTGGGCCAGCTTCCATTGATCTCCATTGATGTGAGCTTCAACCAGCTTTGTGGCCCAATCCCAACTGGCCGACGGTTGAAACAGTTCAAGCCCTCCATGTTTTCCAATAATAAGTGTTTGTGCGGTCCACCTTTGCCAGCATGTAGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_429970.p1 GENE.S_Transcript_429970~~S_Transcript_429970.p1 ORF type:complete len:378 (-),score=22.34,LRR_8|PF13855.2|29,LRR_8|PF13855.2|0.013,LRR_8|PF13855.2|3.7e-08,LRR_8|PF13855.2|0.011,LRR_8|PF13855.2|0.0013,LRR_8|PF13855.2|0.016,LRR_4|PF12799.3|8.5,LRR_4|PF12799.3|0.098,LRR_4|PF12799.3|0.015,LRR_4|PF12799.3|0.0021,LRR_4|PF12799.3|0.019,LRR_4|PF12799.3|1.4,LRR_4|PF12799.3|0.07,LRR_4|PF12799.3|0.061,LRR_1|PF00560.29|3.6e+02,LRR_1|PF00560.29|27,LRR_1|PF00560.29|2.7,LRR_1|PF00560.29|0.45,LRR_1|PF00560.29|2.6,LRR_1|PF00560.29|26,LRR_1|PF00560.29|22,LRR_1|PF00560.29|1.1e+02,LRRNT_2|PF08263.8|1.2e-09 S_Transcript_429970:23-1156(-)
MQGSPHIYFYILMLFFTLSSTQKCNPNDEKVLLKIKAHFNNALVFTTWDPNTTDCCTWGGIECNSNGDVTMIGIGITTDVIRQIPPVIGELSNLQYLHLEVTPGLTGPIPLAIAKLTKLQHLHFPINNLTGPIPEFLTQLTDLEDLDLSSNSFTGPLPLGPDRLTKLKTVNLGSNKLSGPIPDSLSRIKNLDQLYLYENLFSGPIPASLSKLPRLNELDLRQNQLTGSIPANFGSFRNPALNLDLSFNNLSGPIPRSFGKAQLTQLDLSNNKFTGDASFLFGRDKRVLNTIDLSNNLFKFDFSNVGMPPSLKNLDISHNMIYGSLPRTLGQLPLISIDVSFNQLCGPIPTGRRLKQFKPSMFSNNKCLCGPPLPACS*

Click here to download the sequence:
Link to NCBI Protein BLAST