Transcript Information: S_Transcript_429971.p1


Annotated TAIR IDAT5G06860.1
Annotated Gene Namepolygalacturonase inhibiting protein 1
Annotated Gene Symbol(s)PGIP1, ATPGIP1
Annotation TypeHomolog
Chromosome Positionchr5:2132373-2133434 | Forward length=330
E-Value7E-67
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.6005860583297
Replicate 24.5406268746336
Replicate 36.3260044613933
Condition 2: 8 Hour
Replicate 11.8005606600218
Replicate 21.2396011119637
Replicate 30.95611981341605
Condition 3: 24 Hour
Replicate 10.80693501020665
Replicate 20.83718565189674
Replicate 30.46584250880162


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_429971.p1 GENE.S_Transcript_429971~~S_Transcript_429971.p1 ORF type:complete len:379 (+),score=31.86,LRR_8|PF13855.2|1.3e+03,LRR_8|PF13855.2|0.0025,LRR_8|PF13855.2|5.2e-05,LRR_8|PF13855.2|0.033,LRR_8|PF13855.2|8.2e-05,LRR_8|PF13855.2|0.19,LRR_8|PF13855.2|0.0027,LRR_8|PF13855.2|0.076,LRR_4|PF12799.3|1.6e+03,LRR_4|PF12799.3|2.9,LRR_4|PF12799.3|0.002,LRR_4|PF12799.3|0.00045,LRR_4|PF12799.3|0.054,LRR_4|PF12799.3|0.23,LRR_4|PF12799.3|0.41,LRR_4|PF12799.3|0.69,LRR_1|PF00560.29|7.6e+03,LRR_1|PF00560.29|1.2e+03,LRR_1|PF00560.29|0.92,LRR_1|PF00560.29|0.36,LRR_1|PF00560.29|8.9,LRR_1|PF00560.29|2.6,LRR_1|PF00560.29|24,LRR_1|PF00560.29|22,LRR_1|PF00560.29|21,LRRNT_2|PF08263.8|1.2e-09 S_Transcript_429971:77-1213(+)
ATGCAAGGCAGTCGTCCTCAGATCTATTTTTATATTCTCATGCTATTTTTCACCTTATCATCAGCTCAAAAATGCAACCCAAATGATGAAAAGGTGCTACTCAAGATAAAAGCTCACTTCAACAACGCCTTAGTTTTCACCACTTGGGATCCAAACACTACTGATTGCTGCACCTGGGGTGGTATCGAATGCAATTCTAACGGTGACGTCACCATGATCGCTATAGGCATTACTACTGATGTCAGCCGCCAAATCCCACCTGTAATTGGAGAGCTCTCCCACCTTCAATACCTCCTCTTGGAAGTCACTCCTGGGCTTACTGGCCCAATCCCTCCGGCTATTGCCAAGCTGACCAAACTCCAACACCTTCTTTTCAACATAAATAACCTCACAGGCCCAATCCCTGAATTCTTGGCCCAACTTACGGATCTTGAGGAACTTGACCTCAGCTCAAATAGATTCACCGGTCCACTCCCCTCAGGATTGGACCGGCTTACCAAGCTTAAAATTCTTAATCTCGGTTCAAACAAATTATCCGGTCCAATTCCCGACTCCTTGAGCCGGATTAAGAGCCTCGACCAGCTCCACCTCTACGAAAATCGTTTCTCAGGCCCAATCCCGGCTTCTTTGTCTCAACTCCCTAGGCTCAACAAGCTTGACCTCCACCAAAACCAGCTCACCGGCTCAATCCCAACAAACTTCGGCTCGTTTCGAAACCCGGCCTTGAACCTTGACCTTTCCTTCAACAATCTTTCTGGTCCCATCCCCAGATCCTTCGGCAAAGCCCGGCTAACTCAATTGGATCTTTCTAACAACAAATTCACAGGTGATGCCTCGTTTTTGTTCGGAAGAGACAAAAGAGTGCTGAACACCATTGATTTGAGTAACAATCTTTTCAAGTTTGACTTCTCCAACGTTGATCTGCCCCCGAGCTTGAAGAATCTTGACATAAGCCACAACATGATATATGGGTCACTTCCAAGAACACTGGGCCAGCTTCCATTGAAGTCCATTGATGTGAGCTTCAACCAACTTTGTGGCCCAATCCCAACTGGCCGACGGTTGAAACAGTTCAAGCCTTCCAAGTTTTCCAATAATAAGTGTTTGTGCGGTCCACCTTTGCCAGCATGTAGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_429971.p1 GENE.S_Transcript_429971~~S_Transcript_429971.p1 ORF type:complete len:379 (+),score=31.86,LRR_8|PF13855.2|1.3e+03,LRR_8|PF13855.2|0.0025,LRR_8|PF13855.2|5.2e-05,LRR_8|PF13855.2|0.033,LRR_8|PF13855.2|8.2e-05,LRR_8|PF13855.2|0.19,LRR_8|PF13855.2|0.0027,LRR_8|PF13855.2|0.076,LRR_4|PF12799.3|1.6e+03,LRR_4|PF12799.3|2.9,LRR_4|PF12799.3|0.002,LRR_4|PF12799.3|0.00045,LRR_4|PF12799.3|0.054,LRR_4|PF12799.3|0.23,LRR_4|PF12799.3|0.41,LRR_4|PF12799.3|0.69,LRR_1|PF00560.29|7.6e+03,LRR_1|PF00560.29|1.2e+03,LRR_1|PF00560.29|0.92,LRR_1|PF00560.29|0.36,LRR_1|PF00560.29|8.9,LRR_1|PF00560.29|2.6,LRR_1|PF00560.29|24,LRR_1|PF00560.29|22,LRR_1|PF00560.29|21,LRRNT_2|PF08263.8|1.2e-09 S_Transcript_429971:77-1213(+)
MQGSRPQIYFYILMLFFTLSSAQKCNPNDEKVLLKIKAHFNNALVFTTWDPNTTDCCTWGGIECNSNGDVTMIAIGITTDVSRQIPPVIGELSHLQYLLLEVTPGLTGPIPPAIAKLTKLQHLLFNINNLTGPIPEFLAQLTDLEELDLSSNRFTGPLPSGLDRLTKLKILNLGSNKLSGPIPDSLSRIKSLDQLHLYENRFSGPIPASLSQLPRLNKLDLHQNQLTGSIPTNFGSFRNPALNLDLSFNNLSGPIPRSFGKARLTQLDLSNNKFTGDASFLFGRDKRVLNTIDLSNNLFKFDFSNVDLPPSLKNLDISHNMIYGSLPRTLGQLPLKSIDVSFNQLCGPIPTGRRLKQFKPSKFSNNKCLCGPPLPACS*

Click here to download the sequence:
Link to NCBI Protein BLAST