Transcript Information: S_Transcript_43162.p1


Annotated TAIR IDAT3G24870.1
Annotated Gene NameHelicase/SANT-associated, DNA binding protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:9075237-9084278 | Reverse length=1907
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.7574268935413
Replicate 26.5643196363761
Replicate 36.7428056785731
Condition 2: 8 Hour
Replicate 17.8827590027526
Replicate 27.4234374205447
Replicate 36.7290572873012
Condition 3: 24 Hour
Replicate 17.5900780257284
Replicate 27.0860126965887
Replicate 36.6266692562105


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_43162.p1 GENE.S_Transcript_43162~~S_Transcript_43162.p1 ORF type:complete len:1983 (+),score=556.48,HSA|PF07529.9|6.3e-09,HSA|PF07529.9|1.2e+02,HSA|PF07529.9|1.6e+04,HSA|PF07529.9|1.6e+04,Myb_DNA-bind_6|PF13921.2|7.4e-07,Myb_DNA-bind_6|PF13921.2|4.4e+03 S_Transcript_43162:1094-7042(+)
ATGCATGGATTTAGTGCAGGATATAGTTTCCTCGTAAATGCTGAGGTTGATTCCATGGGAGGAGTTGTTGACGGTGGAGTTGGAATTGGTACCAAACCCTCTCCACGCCGAGCGGCAATTGAGAAGGCACAAGCTGAGCTAAGGGTGGAATATGATGTTCGGGAGGAAAGAAGGAGAGAGCTTGAGTTTCTTGAGAAAGGTGGAAATCCTCTTGATTTTAAATTTGGACATGCAGCTTCAGTGAGTGTCCAGTCCACCTCACGCACAGATCAACACCCGGATCAGTTTTTGACCAGTGAAGCAAAGGGGAGTTTTGCATTGACTGCCTCACCTCATGATGATTCTGTTGAAAGTAGTGGGAGATTGGGGGTTAACACAGCCTGTGAACCTAACAGTGCAGATAATTTTGATGGTGAAAATGAATTGGTTGAAAGCGAGAGAAAGTCCATGCATCATGGCAGAGGTAGTGTTACACTGTCGGAGCATTCTTCTCAGCTTGATGGGAGCCAAAACGTTAAGGAGTCAGAAGACTCACCTATTTTTCAAGCTAAAAAAGGTCAAGCATATAGAAGAAGGAACCGGTCCAAAGCAAACCGTGATGGCCCTCGGGCCAATTCTGCTGAAATGGCAACTCGTGGTGGTCATGGTCCTTCTTTGCCAAATCGCCAGGGATTACTTTCCAAACCTATTGCTTCTGAGAATCAGTTTGAACTGGAGTCAGACGGCACACATGCTCCACATTCTACTACAACCTCAAGAGCCAGTGATTTTCCTGAAGGTAAGCTAGATGTATCAACTTCCAAGGATAAGCAGGAGGAACTGCGTAATCAAAATCTAAAAGCTGAGGAAGCTCCTGTTGCTACAAGTAGTGCAGAACCTGATTTAGTTGCAGGGATGGAGAACATGGTTCCAGTGGATGTTGATTATTCTCCATGTTTAGGTTCAGAGAGAACTGAAGATAATGCTATTGCTGCACAGCGGAATGAGACTGGTAAGATGGGTGCGGATGAGAAATGCACACAAACTGAAGGTCTTATTAGCAATGCAGTGTCGACCATGAAGGCTTTAGATGCTGAGTCTTCTTGCACTCAAAATAGCCTTAGTGTAGATGGAAATGGAAATATAGATAGTGAGTTACATAATAACTTAAGAAATGTAGATAGTAATGGGGCTGCTAAGGAACATATGGAGAAGTCCCTTAGTAAAGATGAGAAAGTGCTGAATGAAAAGCATGCTACCAGTGCTTTGGAAGGTGGTACTTGTAAGGAGGACCAGACTCCTATCAGTCACCAAGACAATGGTTTTGCAGATAAAGATCAGGAAGCAGTTGACAAAGGAAAATCCTCTGCCAGAGATGAGGCCAAGGGACCCTCTACTGTGGCAGAGCAGGAAGCAAATAATCATATGCAAATGAAATCAGAGGTACAGTCAGGTCTAGTTGAGAACTCCATTCTGAAATTGGAGGCCTCATCTCCTCTGAGACCACCTTCCTCTGCACATCCCTGTTCCCATGAGTTTCATCAGATGGATTTGCCTTGTCCACATCATGTTGTGCAGCCTCAAACTTGTTCTGAAGAGCAGCCGAAGCTGGTTGATACGGCACATGAGGATAGAATATTGGAAGAGGCACGGATTATTGAGGTGAAACGTAAGAGAATTGCAGAGTTATCTGTTGGTTTGCTGCCAAGAGAGTATCGGCGGAAGTCTCACTGGGATTTTGTTCTCGAGGAGATGGCTTGGTTAGCAAATGATTTTGCTCAGGAGCGCCTTTGGAAAATGTCTGCAGCTGCTCAAATTGGCCACCGGGCTGCTTTTGCTTCTCGATCAAGGTTAGAGGAGCAAAATAAATGCTGGAAGCAGAAAAGTGTAGCTCACACTTTGGCAAAGGCTGTTATGGATTTCTGGGATTCAGCTAGGTTGCTTGCGGAGAATGTTAACAGCGCTCAGTCAGAAAAATGCATTGATGATGCAAGGACTGATGAAGCTGAAGTTGCAGGCTGCAGGGCTGGGGGTCCCGATAAGGATGAGGCCCCTGAACAGGAGGTGCAATCTCATGGATGGAAAAGGGATCTTGCTGTCCACAGCTATGCTGTTAGATTTTTGCAGTTTAATGGGTCCTCAACAGATATTGTCAAAGTTGCAGTTCCTGAGATTGCTTCTGTAGCATTTGATATTGACGTTCCACAAGTTTCGTGGCAGGATCAGTTTACAGAAGAAAACCTCTTCTATGTAGTCCCTCCTGGTGCAATGGAGACCTACAGAAAATGCATTGAATCATGCCTGGCTGAGTCCGAGAGGGCGGGCAACACTATGCAAGAGGAAGTTGATACATCCATGTATACTGCAACAGAAATTGGATACCAAGAAAATGATTATGAAGAAGATGAAGGGGAAAATGTATATTATCTGCCTGGAACTTTTGACACTGGGAAGCCATCAAAAAAGAAACGGAAAAATATGAAGTCTTCTGCCGCTAGATCATATGAATCAGGAGGTGATCTTGGTTATGGGCACTGCATGGAGAACAGGAATGGAACCCCACATTCTGCTTTAATGGGAAAAAGGCCTTCCAATAATCTTCATGTTGGTCCCATTCCTACAAAAAGGATGCGTACTGCCTCTAGGCAAAGGGTTGTGGGCCCTTTCAGTGCTGGGCCTGCTGGACTTGCATCAGCACCGAGTAGGGCTGATGCTTCTAGTGGAGATACTAATTCTTTTCAGGATGACCACAGCACTTTGCATGGTGGTTCTGTTGTTCCCAGAGGCTCAGAGGTTGATTCAGGAATGGATTTTGAGAAGCAATCTGCTTTTGATTCTACAGAAATTTTAGCCAAACCTAAGAAGAAAAAGAAAATAAAGCATCAGGGTGCAGCATATGACCCGAGATGGCAGCTTGAATCTGCTATGCAGAATGAACAGAAGGATCATGTAAGAAAGAGATTAGACGGTTATCAGCTTGAATCCAATGGAAATAGTAGTGTATTTGGGCAGCATGCTAAGAAGCCAAAGATTATAAAGCAGTCTGTGGATTGTTCATTTGATGACACAGTGCCCATGAGTGGGTTGGTTGCTTCACCAGTGGCTTCTCAAATGAGTAACATGTCCAACCAAAGTAAAATCATTAAATTGATTGGGGGGCGGGATAGAGGTAGAAAAGCAAAAGCTCTCAAGGTGGCTGCTGGACAGGCTGGTTCAGGAAGCCCATGGTCGTTATTTGAAGATCAGGCACTTGTTGTGCTTGTTCATGATATGGGTCCAAATTGGGAGCTTGTAAGTGATGCTATCAATAGCACTTTGCAATTTAAGTGTATATTTCGCAAGCCGCAAGAATGCAAAGAGCGGCATAAAGTTTTGATGGACAGGACTTCTGGTGATGGGGCTGACAGTGCTGAAGATTCAGGATCATCTCAACCTTATCCTTCCACTCTACCTGGCATTCCAAAGGGAAGTGCAAGACAATTGTTTCAACGTCTGCAGGGACCCATGGAGGAGGATACCATTAAGTCTCATTTTGAGAAGATAATTCACATCGGCCAGCCGCTGCACTACCGGAAGAAACAGAATGATAATCAGGATCTGAAGCAAATAGCACCTGTTCACGGTTCACATGTGGTTGCGCTTTCCCAAGTCATTCCCAACAATGTGAATGGGGGTATTCTAACACCACTTGAGCTATGTGATGTTGCTGCATCAAATCAAGACTTGCTTCCTCTTGGATATCAAGGTCCTCATGCTGGTGGGTTGGCTTTGCCCAATCAAGGAGCTATTCCACCGATGCACCCTCCTAATGGGTTTAATTCCTCTCTTCAAGGCATTCAAGGTTCTCCTAGCATGGGTGTTGGTAACAATTTAGCATCACCATCTGCCCACTATAACAACTCCCGACACCCAACTCCTAGATCCGGATCTTTGCCAATTGAGGAGCAGCAGAGACTCCAGCAATATAGTAACATGTTATCAGGAAGAAACATTCAGCCATCAAACTTGCCATCTTCTGGAGGTCTTTCAGGAACTGATCGTGGTGGTCGTATGCTTCCTGGTGGCAATGGTGTTGGCATGATGGCTGGAATGAGCCGAAGCATGCCAATGCCAAGATCAGGACTTCAAGGAATGGCGTCGTCTTCAATGCTTAATTCTGGGAATATGCTGCCTGGCAACATGAACATGCACTCTGGAGCAGCTCCTGGTCAAGGAAACTCGATGTTTAGACCTCGTGAAGCAATGCATATGGTGCGGCCTGGGCAGAGTTCAGATCATCAAAGACAGATGATGTTGCCAGAAATGCAGATGCAGGGGACCCAATCTAATAGTGCAGGAGTCTCTCCGTATGGTGGGATGAATTCTGGGTTCTCTTCCCAGGCTGCTTCTCCACCCGTTCAACCGTACCCTGGCCATCACCAGCAACCGCATCCAATGTCGCAGCAACAGTCCCATGTGCTTGGCAGTTCTCATCATCCGCATCTCTCAGGATCGAATCATTCTGCTACTACTGATCAAGCAATTCTCCGTCTTGCTCGAGAGAGGCAGTTTCAGCAGCAGCAGAGGTTATTGCAGAGGCAGCAACAACAGAAGCATCAACAGCTTCCTGCATCCAGTGCATTAATGACACATGCTCAGACTGCAGCCCAAATCCCTATATCATCTTCTCTGCAGAGCAACTCCCAGCTTCAGCCCCAAACTTCTTCTCCACATGGATCGCTGCCCTCTCTAACTCCAACATCCTCAATGGTTCATGTGTCTTCACAGCCACAACAGCAGCCAAAGCACCAGGTGACATCTCATGGACTTGTGAGAGGCACACAGAGTGCTGTAAGTGGAATGTCAAATCAAGTGGGGAAGCAACGGCAACGGCAAGCATCACAGCTTCAGCAGCAGTATCAGCAATCTGGGAGGCAACATCCACAGCAGCGCCAACAATCTCAGCCTCAGCAGCAGGCTAAAGTTCTGAAAGGAATAGCACGAAATAATATGCTGATGCATCAAAGTCTTCCCATGGATCCGTCTCACCTTAATGGCATTTCAGCAAATCCAGGAGCCCAAGCTACTGAGAAAGGGGAGCAACCTGTTCATTTGATGCAAGGCCAGGGCTTATATTCAGCTTCAGGCCTAAACACGATGCAGCAATCCAAATCTCTAGCCAGTCCTCAGACTTCAAATCACTCCCAGCCTCAAAAAACATATGCAACTACTGTCCCAGCAACTACAAAGCAAGTCCAGCAAACACCTTCTCACCTAGATAGCAACCAAACCCAGATTCCAGCAGTCCCTTCTGCTCCTGCAGCAGCAGCAGCAGCATCAAATCAAGGTGTTTCATCGACTGTAATGTCTTCTCTTGGGCATCAACATTTGCAAGGGCAGTCTAAACAGTCTATAAAGGTGGTCAGTCATCATTCTACTCTTCAGAGGCCAATTCAACCAAGTCGTCAAGTGCATTCTGATTCCTTGGCCAAATCGCAAGCTGATCAGAGCCCATTGGAGCAGCAATTCGGAAATAATAATTCGAAGAGCAACAGCTCTGGGATCCCAGTGGGATGTGTTGATTCTACAAGTGTGATACCTCTGTCATCTTCTGCCACCACTGCTACACGGAAGGCACAGGAATCACTATGTGATACTGTTATGCCAAGTTCATCCACTTCTTCAGGTCCCATTGGCAGCCCAGTTCTTGCAAATTCATCAGGTAATGAGCCACTGCCATCAGTTAGTCAAGCTCCGGTGCAGAGGCAGTTATCAGGTAACTCGGTAGCCCATGGGCATAGTGTTGGGTCACAATGGCAGCAACAGCAATCCCAGTTACAACAGCCTCCACCAGTGCAACCCAAATTGCCGCAGAAGCAGTCACAACAGAAGCTACAGCAGCTTGAACAATCACCCCAGACAGTGCCACAACAGCAGCCTCAGCCACAGATTCAATCTGGGCCAGGTGGTTATGTTCGCAAGGAGCACTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_43162.p1 GENE.S_Transcript_43162~~S_Transcript_43162.p1 ORF type:complete len:1983 (+),score=556.48,HSA|PF07529.9|6.3e-09,HSA|PF07529.9|1.2e+02,HSA|PF07529.9|1.6e+04,HSA|PF07529.9|1.6e+04,Myb_DNA-bind_6|PF13921.2|7.4e-07,Myb_DNA-bind_6|PF13921.2|4.4e+03 S_Transcript_43162:1094-7042(+)
MHGFSAGYSFLVNAEVDSMGGVVDGGVGIGTKPSPRRAAIEKAQAELRVEYDVREERRRELEFLEKGGNPLDFKFGHAASVSVQSTSRTDQHPDQFLTSEAKGSFALTASPHDDSVESSGRLGVNTACEPNSADNFDGENELVESERKSMHHGRGSVTLSEHSSQLDGSQNVKESEDSPIFQAKKGQAYRRRNRSKANRDGPRANSAEMATRGGHGPSLPNRQGLLSKPIASENQFELESDGTHAPHSTTTSRASDFPEGKLDVSTSKDKQEELRNQNLKAEEAPVATSSAEPDLVAGMENMVPVDVDYSPCLGSERTEDNAIAAQRNETGKMGADEKCTQTEGLISNAVSTMKALDAESSCTQNSLSVDGNGNIDSELHNNLRNVDSNGAAKEHMEKSLSKDEKVLNEKHATSALEGGTCKEDQTPISHQDNGFADKDQEAVDKGKSSARDEAKGPSTVAEQEANNHMQMKSEVQSGLVENSILKLEASSPLRPPSSAHPCSHEFHQMDLPCPHHVVQPQTCSEEQPKLVDTAHEDRILEEARIIEVKRKRIAELSVGLLPREYRRKSHWDFVLEEMAWLANDFAQERLWKMSAAAQIGHRAAFASRSRLEEQNKCWKQKSVAHTLAKAVMDFWDSARLLAENVNSAQSEKCIDDARTDEAEVAGCRAGGPDKDEAPEQEVQSHGWKRDLAVHSYAVRFLQFNGSSTDIVKVAVPEIASVAFDIDVPQVSWQDQFTEENLFYVVPPGAMETYRKCIESCLAESERAGNTMQEEVDTSMYTATEIGYQENDYEEDEGENVYYLPGTFDTGKPSKKKRKNMKSSAARSYESGGDLGYGHCMENRNGTPHSALMGKRPSNNLHVGPIPTKRMRTASRQRVVGPFSAGPAGLASAPSRADASSGDTNSFQDDHSTLHGGSVVPRGSEVDSGMDFEKQSAFDSTEILAKPKKKKKIKHQGAAYDPRWQLESAMQNEQKDHVRKRLDGYQLESNGNSSVFGQHAKKPKIIKQSVDCSFDDTVPMSGLVASPVASQMSNMSNQSKIIKLIGGRDRGRKAKALKVAAGQAGSGSPWSLFEDQALVVLVHDMGPNWELVSDAINSTLQFKCIFRKPQECKERHKVLMDRTSGDGADSAEDSGSSQPYPSTLPGIPKGSARQLFQRLQGPMEEDTIKSHFEKIIHIGQPLHYRKKQNDNQDLKQIAPVHGSHVVALSQVIPNNVNGGILTPLELCDVAASNQDLLPLGYQGPHAGGLALPNQGAIPPMHPPNGFNSSLQGIQGSPSMGVGNNLASPSAHYNNSRHPTPRSGSLPIEEQQRLQQYSNMLSGRNIQPSNLPSSGGLSGTDRGGRMLPGGNGVGMMAGMSRSMPMPRSGLQGMASSSMLNSGNMLPGNMNMHSGAAPGQGNSMFRPREAMHMVRPGQSSDHQRQMMLPEMQMQGTQSNSAGVSPYGGMNSGFSSQAASPPVQPYPGHHQQPHPMSQQQSHVLGSSHHPHLSGSNHSATTDQAILRLARERQFQQQQRLLQRQQQQKHQQLPASSALMTHAQTAAQIPISSSLQSNSQLQPQTSSPHGSLPSLTPTSSMVHVSSQPQQQPKHQVTSHGLVRGTQSAVSGMSNQVGKQRQRQASQLQQQYQQSGRQHPQQRQQSQPQQQAKVLKGIARNNMLMHQSLPMDPSHLNGISANPGAQATEKGEQPVHLMQGQGLYSASGLNTMQQSKSLASPQTSNHSQPQKTYATTVPATTKQVQQTPSHLDSNQTQIPAVPSAPAAAAAASNQGVSSTVMSSLGHQHLQGQSKQSIKVVSHHSTLQRPIQPSRQVHSDSLAKSQADQSPLEQQFGNNNSKSNSSGIPVGCVDSTSVIPLSSSATTATRKAQESLCDTVMPSSSTSSGPIGSPVLANSSGNEPLPSVSQAPVQRQLSGNSVAHGHSVGSQWQQQQSQLQQPPPVQPKLPQKQSQQKLQQLEQSPQTVPQQQPQPQIQSGPGGYVRKEH*

Click here to download the sequence:
Link to NCBI Protein BLAST