Transcript Information: S_Transcript_43421.p1


Annotated TAIR IDAT5G39600.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Ribosomal protein L53, mitochondrial (InterPro:IPR019716); Has 50 Blast hits to 50 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:15854188-15854771 | Reverse length=127
E-Value8.1E-71
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.2836050820397
Replicate 29.2355863264016
Replicate 36.862413426456
Condition 2: 8 Hour
Replicate 17.6044027487451
Replicate 26.243306597133
Replicate 39.4186303370848
Condition 3: 24 Hour
Replicate 12.7094429135621
Replicate 23.8651461603073
Replicate 32.93279586106


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_43421.p1 GENE.S_Transcript_43421~~S_Transcript_43421.p1 ORF type:complete len:129 (+),score=36.79,MRP_L53|PF10780.5|1.3e-13 S_Transcript_43421:126-512(+)
ATGTTGAAGTTCTTGTCAAAGGTGAAGCTAGAGTTCAACGCATTAGACGCTCGTGCAGGGGCATGCATGGAGTTCTTAGCCCAGTGCAGCTCAGGTAAAGCGAAAGAGTCAAACCCAGCATGTCAAGTTGAAGTCAAACGTAGAACTGACGACCACCCTCCTCAAATCAAGGTCACTTTCGTTAATGGATTTGAGGAAGTCTTTGATGCTTCAAAAACCTCTGCTCAGTCTATCAGATCTCTCATCCTTGACAAGGGTCAGTACCTTGAGACTGAACAGATGTTTCGCGATGCTGGTGAAACTTGGCCTGTTGTTATTCCTGATGATGAACTTAAGCAACCTGCTCCTGGGATCAAGCCAAGGAAAGCAGAGGACAAGAAGCAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_43421.p1 GENE.S_Transcript_43421~~S_Transcript_43421.p1 ORF type:complete len:129 (+),score=36.79,MRP_L53|PF10780.5|1.3e-13 S_Transcript_43421:126-512(+)
MLKFLSKVKLEFNALDARAGACMEFLAQCSSGKAKESNPACQVEVKRRTDDHPPQIKVTFVNGFEEVFDASKTSAQSIRSLILDKGQYLETEQMFRDAGETWPVVIPDDELKQPAPGIKPRKAEDKKQ*

Click here to download the sequence:
Link to NCBI Protein BLAST