Transcript Information: S_Transcript_43429.p1


Annotated TAIR IDAT5G39600.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Ribosomal protein L53, mitochondrial (InterPro:IPR019716); Has 50 Blast hits to 50 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:15854188-15854771 | Reverse length=127
E-Value7.2E-62
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 118.318039811228
Replicate 218.4811678761
Replicate 317.604429897982
Condition 2: 8 Hour
Replicate 142.512304073765
Replicate 239.513914480556
Replicate 337.925598985486
Condition 3: 24 Hour
Replicate 113.901289494015
Replicate 215.305431194416
Replicate 320.144879622268


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_43429.p1 GENE.S_Transcript_43429~~S_Transcript_43429.p1 ORF type:5prime_partial len:154 (+),score=28.75,MRP_L53|PF10780.5|1.7e-12 S_Transcript_43429:1-462(+)
CCGGGAACTCAAATCACCACCACATTAGATTTGTCCGTAACACTAATCACTAACCAAGGAGCGAAACAGAGAGCCAAAATGTTGAAGTTCTTATCAAAAGTGAAGGTAGATTTCAACGCCCTAGACTCCCGTGCAGTAGCATGTATGGAATTCATAGCCCAATGCAATTCTGGGAAAGCCAAACAATCAAACCCTTCTTGTGAAATCAAAGTGAATCGTCGAACAGATGATCACCCACCTCAAATCAAAGTCACTTTCCTTAATGGGGTTGAACAAGTCTTTGACGCTTCCACCACTTCTGCTCAATCTATTCGTTCTCTCATTCTTGACAAGGGTCAGTACCTTCACACTGAACAGATGTTTCGTGATGCTGGTGAAAAATGGCCTGTCAATATTCCTGAAGACGAGCTCCAAACACCTGCCCCTCGTGTTAAGCCTGTGAAAGCAGAGGGAAAGCAGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_43429.p1 GENE.S_Transcript_43429~~S_Transcript_43429.p1 ORF type:5prime_partial len:154 (+),score=28.75,MRP_L53|PF10780.5|1.7e-12 S_Transcript_43429:1-462(+)
PGTQITTTLDLSVTLITNQGAKQRAKMLKFLSKVKVDFNALDSRAVACMEFIAQCNSGKAKQSNPSCEIKVNRRTDDHPPQIKVTFLNGVEQVFDASTTSAQSIRSLILDKGQYLHTEQMFRDAGEKWPVNIPEDELQTPAPRVKPVKAEGKQ*

Click here to download the sequence:
Link to NCBI Protein BLAST