Transcript Information: S_Transcript_43492.p1


Annotated TAIR IDAT1G44446.1
Annotated Gene NamePheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain
Annotated Gene Symbol(s)CH1, ATCAO, CAO
Annotation TypeOrtholog
Chromosome Positionchr1:16848664-16851152 | Reverse length=536
E-Value2.3e-319
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 1148.2439036909
Replicate 2203.20118937681
Replicate 3232.31619149211
Condition 2: 8 Hour
Replicate 127.606978084093
Replicate 221.238565500378
Replicate 320.236057951446
Condition 3: 24 Hour
Replicate 1250.4169570873
Replicate 2212.0108152339
Replicate 3225.95733965184


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_43492.p1 GENE.S_Transcript_43492~~S_Transcript_43492.p1 ORF type:complete len:533 (+),score=98.05,Rieske|PF00355.22|1.9e-21,PaO|PF08417.8|1.1e-14 S_Transcript_43492:505-2103(+)
ATGACTGCCGTTGCTACTGCTTCTGCTCTTTCTCTTCCTATCTCTCTTAGCCGCCCTTCTAAGCTTATCCCCAAAAAGGTTAGAGGAAGCATTGGAGTGTTTGCTGTATTTGGAGAAGATGGAGGGTCACTGGATAAAAAGAGCATCTGGGCCCCACTATTTGACGTGGAGGATCCAAGACCGAGAGCTCCACTGAATAAAGGGAAGTTTCTGGATGTGAATCAAGCACTGGAAGTAGCAAGATTTGACATCCAGTACTTGGACTGGCGAGCTCGGCAGGATGTTCTTGCAATTATGCTCCTACATGAAAAGGTTGTGGAGGTTCTAAACCCGCTTGCACGGGACTACAAATCAATTGGCACGATGAAAAAGGAGCTAGCGGAGCTGCAAGAAGAGCTCACACAAGCTCATAAACAGGTCCATATATCTGAAACACGGGTCAATGCCGCTTTAGATAAGCTAGCTTACATGGAAGAACTCGTTAATGATAGGTTGTTGCAAGACAGAAGTTCAACTGTAACTGAGGCAGCCCCATCCTCCACGAGCACCTCCACACAATCCTCGGAAGGTCTTAAGAAGAAGATGCCGCGTAAAAGTTTAAATGTATCAGGTCCTGTAAAATCTTATCACCCCAGCTTGAAGAATTTTTGGTATCCTGTCGCTTTTTCTTCAGACTTGAAGGATGACACTATGATACCAATAGAATGCTTTGAAGAACCGTGGGTCATTTTTCGAGGCAAAGATGGGAAACCTGGGTGTGTTCAGAACACTTGTGCACATAGAGCATGCCCTCTTCATCTTGGTTCCGTGAATGAGGGCCGCATCCAATGCCCCTATCATGGATGGGAGTATTCAACAGATGGAAAATGTGAGAAAATGCCATCAACAAGGTTACTTGATGTCAGGCTAAAATCAGTACCATGCTTTGAGCAGGAAGGAATGATCTGGATTTGGCCTGGAAGTGATCCTCCAGCTGCCACCCTCCCTTCATTGCTGCCGCCTCAAGGGTTTGTGATTCATGCCGAGATAGTAATGGAACTTCCTGTTGAGCATGGGCTTCTACTGGATAATCTTCTGGACCTTGCACATGCACCCTTCACTCACACATCCACATTTGCAAAAGGGTGGGCTGTTCCGAGCTTGGTCAAATTCTTGACACCGGGATCTGGACTTCAGGGATACTGGGACCCTTATCCCATAGACATGGAGTTCAGACCGCCTTGTATGGTGCTTTCAACAATCGGGATCTCAAAGCCAGGAAAACTGGAGGGGCAGAGCACCGAGCAGTGTGCAACCCATCTTCACCAGCTTCATGTTTGTTTACCATCTTCAAAGCAGAAAACAAGGCTGCTGTATAGAATGTCATTAGATTTCGCTCCCATATTGAAGCATGTTCCTTTCACACAATATTTGTGGAAGCATTTTGCCGAAAAGGTTTTGAACGAAGATCTAAGACTCGTTCTTGGACAACAAGAACGGATGATCAATGGAGCAAATGTTTGGAACTGGCCGGTAGCCTATGACAAACTCGGGGTCAGATATAGGCTCTGGAGAGAGGCTGTGGAGCGAGGAGAGAAACGGTTACCTTTTAGCAAATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_43492.p1 GENE.S_Transcript_43492~~S_Transcript_43492.p1 ORF type:complete len:533 (+),score=98.05,Rieske|PF00355.22|1.9e-21,PaO|PF08417.8|1.1e-14 S_Transcript_43492:505-2103(+)
MTAVATASALSLPISLSRPSKLIPKKVRGSIGVFAVFGEDGGSLDKKSIWAPLFDVEDPRPRAPLNKGKFLDVNQALEVARFDIQYLDWRARQDVLAIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEELTQAHKQVHISETRVNAALDKLAYMEELVNDRLLQDRSSTVTEAAPSSTSTSTQSSEGLKKKMPRKSLNVSGPVKSYHPSLKNFWYPVAFSSDLKDDTMIPIECFEEPWVIFRGKDGKPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTRLLDVRLKSVPCFEQEGMIWIWPGSDPPAATLPSLLPPQGFVIHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWAVPSLVKFLTPGSGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLEGQSTEQCATHLHQLHVCLPSSKQKTRLLYRMSLDFAPILKHVPFTQYLWKHFAEKVLNEDLRLVLGQQERMINGANVWNWPVAYDKLGVRYRLWREAVERGEKRLPFSK*

Click here to download the sequence:
Link to NCBI Protein BLAST