Transcript Information: S_Transcript_436191.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value1E-23
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.31065760196709
Replicate 21.8886434640674
Replicate 31.1481859040374
Condition 2: 8 Hour
Replicate 10.16595634488041
Replicate 20.26114998412132
Replicate 30.99529249517423
Condition 3: 24 Hour
Replicate 10.76499591990408
Replicate 20.88186037262052
Replicate 31.4721037590535


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_436191.p1 GENE.S_Transcript_436191~~S_Transcript_436191.p1 ORF type:internal len:257 (-),score=57.11,UBN2_3|PF14244.2|9.9e-38,Retrotrans_gag|PF03732.13|2.5e-10 S_Transcript_436191:1-768(-)
CCATTTGATGGTAATGGTTTCAATTCATGGAAGAGAGGTAAGCTTATTGCTTTGACTGCTAAGAATAAATTAGGTTTAGTGAATGGAACTGTTACTAAACCTGTTGCTGATTCTTCTATTCTGATGCTTTGGGAAAGATGCAATAATATGGTAATTTCATGGATTTTGAATGCTTTAGCAAGAGATATTGCAGATAGTGTTCTATATAATGATACTGCTGAACAAATTTGGAAGGATTTGAATGAAAGATTTGGACAATCTAATGGTCCACAGTTGTTTAGATTACAAAAGGATATAAATGAAACATCACAAGGTGATTCTGATGTGCCTACTTACTACACTAGAATGAAAAGACTCTGGGATGAACTTCATTCTTTAGATGTTATGCCTACATGTACATGTGGAGCAACACAGGAGATGATCAGAAGGGAACAAGAAAGAAAACTTATACAGTTTCTTATGGGACTAAATAATGATTTTTCAACTGCTAGAGGAAATATATTAATGATGAAGCCTTTGCCTAGTGTAGCTACAGCTTATTCCTTGCTAATGCAAGATGGTAACCAAAGAGAATTGATGACTGGACATAGCAATGTAAATTTTGTGAATGAAGCATCTTCATTTCTTGCTGGTGATCAGAGGAATTTTAGGAGAAATTTCTCAAAACCTGATTTCAGAGGAAATAATCAGAAGTTTGATTCAAGGAGAGACAATAGGAGACCTATCATGTTTTGTCAGTATTGCAAGAGACAAGGACACTCTGAGGAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_436191.p1 GENE.S_Transcript_436191~~S_Transcript_436191.p1 ORF type:internal len:257 (-),score=57.11,UBN2_3|PF14244.2|9.9e-38,Retrotrans_gag|PF03732.13|2.5e-10 S_Transcript_436191:1-768(-)
PFDGNGFNSWKRGKLIALTAKNKLGLVNGTVTKPVADSSILMLWERCNNMVISWILNALARDIADSVLYNDTAEQIWKDLNERFGQSNGPQLFRLQKDINETSQGDSDVPTYYTRMKRLWDELHSLDVMPTCTCGATQEMIRREQERKLIQFLMGLNNDFSTARGNILMMKPLPSVATAYSLLMQDGNQRELMTGHSNVNFVNEASSFLAGDQRNFRRNFSKPDFRGNNQKFDSRRDNRRPIMFCQYCKRQGHSEE

Click here to download the sequence:
Link to NCBI Protein BLAST