Transcript Information: S_Transcript_436233.p1


Annotated TAIR IDAT4G38440.1
Annotated Gene NameLOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II-associated protein 1, C-terminal (InterPro:IPR013929), RNA polymerase II-associated protein 1, N-terminal (InterPro:IPR013930); Has 276 Blast hits to 220 proteins in 102 species: Archae - 0; Bacteria - 2; Metazoa - 151; Fungi - 65; Plants - 41; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:17989115-17994549 | Forward length=1465
E-Value2E-10
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.58490112604792
Replicate 20.7273447106873
Replicate 30
Condition 2: 8 Hour
Replicate 10.23434494853992
Replicate 20.73753347163934
Replicate 30.23424008357122
Condition 3: 24 Hour
Replicate 11.6803756531226
Replicate 20.49810574893071
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_436233.p1 GENE.S_Transcript_436233~~S_Transcript_436233.p1 ORF type:internal len:91 (+),score=11.98 S_Transcript_436233:1-270(+)
TCCCTGGCCTCTGTGTGGTGTCTTCATGGAATATTCCGTGTAATAGTTTCTATTGATTGTTGCATGCAAATGATCAGGGGCAAGGATGGACTTGTGCGTTTCTGTGGAAATGAGTGCTACAGTGGAATACTCAAACAGGGCATACTTAAGGGTTCAATTGGCCAATGGAGAATTGTGATTTCTGAATTCATGAAGTTAGTCACATCAGAATGGCACTTAGTAAATAGTATTGAAGTGTTTGGCAGGGGAGGTCCAGCTCCTGGTGTTGGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_436233.p1 GENE.S_Transcript_436233~~S_Transcript_436233.p1 ORF type:internal len:91 (+),score=11.98 S_Transcript_436233:1-270(+)
SLASVWCLHGIFRVIVSIDCCMQMIRGKDGLVRFCGNECYSGILKQGILKGSIGQWRIVISEFMKLVTSEWHLVNSIEVFGRGGPAPGVG

Click here to download the sequence:
Link to NCBI Protein BLAST