Transcript Information: S_Transcript_436236.p1


Annotated TAIR IDAT4G38440.1
Annotated Gene NameLOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II-associated protein 1, C-terminal (InterPro:IPR013929), RNA polymerase II-associated protein 1, N-terminal (InterPro:IPR013930); Has 276 Blast hits to 220 proteins in 102 species: Archae - 0; Bacteria - 2; Metazoa - 151; Fungi - 65; Plants - 41; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:17989115-17994549 | Forward length=1465
E-Value8E-17
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.73632809741606
Replicate 21.8312987379755
Replicate 31.6037161811827
Condition 2: 8 Hour
Replicate 12.9501528106706
Replicate 22.6527883762522
Replicate 32.0220566898006
Condition 3: 24 Hour
Replicate 12.2449287381638
Replicate 21.7916056582093
Replicate 31.4953781267855


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_436236.p1 GENE.S_Transcript_436236~~S_Transcript_436236.p1 ORF type:internal len:253 (-),score=45.62 S_Transcript_436236:2-757(-)
ATTGGGGCAATGCCGGTCTTGGTTGCTAAAATTGCCTTTCAAATAATTAAAGCCAACTTCCTGAACTTTTCTAATGAAAGGATGAATGAGTATTCTACAGAACAATGTGGGATGCACTTTTCCATTGAAAAGTTGTGTTGTCTCAGACATGACTCGGATACTGAAGTGTCCCTGGCTTCTGTGTGGTGTCTTCATGGAATATTCCGTGTAATAGTTTCTATTGATTGTTTCGTTCAAATGATCAGGGACAAGGATGGACTTGTGCGTTTCTGTGGAAATGAGTGCTACAGTGGAATACTTGAACAGGGCATAATTAAGGGTTCAATTGGCCGGTGGAGAACTGTGATTTCTGAATTCATGAGGTTAGTCACATCAAAATGGAACTTAGTGAATAGTATTGAGGTGTTTGGCAGGGGAGGTCCAGCTCCTGGTGTTGGAGTTGGATGGGGTGCTTCGAGCGGTGGATTTTGGTCTTTAATTGTTGCTTTGGTTCAAGCAGATGCAAAATTGCTAACTGAGCTGCTTGAAACATTTTATCTTTCCCCTGCCATGGATCTTCCTGGGGTAATGGAGGAGACTTTTATCACACAAAGTATCACTTCTGCCTTAGCATTGAGTTTAATGGTGGGTCCAGGTAACAAGGTGACCTTACAGAGTGTATTTGATGTGTTGCTGCAAATCCCCATTCTCAAGTATTTTGATCAATGTATCTTCCAATTTCTTCATCGTTATCATGGACAAGAGCTTGTCAAATGG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_436236.p1 GENE.S_Transcript_436236~~S_Transcript_436236.p1 ORF type:internal len:253 (-),score=45.62 S_Transcript_436236:2-757(-)
IGAMPVLVAKIAFQIIKANFLNFSNERMNEYSTEQCGMHFSIEKLCCLRHDSDTEVSLASVWCLHGIFRVIVSIDCFVQMIRDKDGLVRFCGNECYSGILEQGIIKGSIGRWRTVISEFMRLVTSKWNLVNSIEVFGRGGPAPGVGVGWGASSGGFWSLIVALVQADAKLLTELLETFYLSPAMDLPGVMEETFITQSITSALALSLMVGPGNKVTLQSVFDVLLQIPILKYFDQCIFQFLHRYHGQELVKW

Click here to download the sequence:
Link to NCBI Protein BLAST