Transcript Information: S_Transcript_436330.p1


Annotated TAIR IDAT5G35695.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:13869120-13869941 | Forward length=211
E-Value2E-07
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.25589424264597
Replicate 20.63642662185139
Replicate 30.3546680016077
Condition 2: 8 Hour
Replicate 10
Replicate 20.64534178768442
Replicate 30
Condition 3: 24 Hour
Replicate 10.42009391328066
Replicate 20.65376379547156
Replicate 30.2425196577415


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_436330.p1 GENE.S_Transcript_436330~~S_Transcript_436330.p1 ORF type:complete len:104 (-),score=15.13,DDE_Tnp_4|PF13359.2|2.5e-10,Plant_tran|PF04827.10|1.3e-05 S_Transcript_436330:102-413(-)
ATGAAACATTCCCAAGCAAGGAATATTATAGAAAGATGTTTTGGATTGCTTAAAATGAGATGGGGTATACTAAGGAACACTACTTGGTACTCTGGAAAGACCATGGGTAGAATTATCTTGGCATGTGCTCTGATGCATAATTTCATTCGAAGATACATGAGTATAGGCCCCCTGGAGTCGTTCGTTCCAGATAACATGGAGGAAGAGACTGAAGAAAATATTGAGGTTATGGAGACTACCCCTGAATGGAATAATTATAGAGAAAGTCTTGCAAATGAGATGTACAATGCATGGTTGCAAACAAGGGTTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_436330.p1 GENE.S_Transcript_436330~~S_Transcript_436330.p1 ORF type:complete len:104 (-),score=15.13,DDE_Tnp_4|PF13359.2|2.5e-10,Plant_tran|PF04827.10|1.3e-05 S_Transcript_436330:102-413(-)
MKHSQARNIIERCFGLLKMRWGILRNTTWYSGKTMGRIILACALMHNFIRRYMSIGPLESFVPDNMEEETEENIEVMETTPEWNNYRESLANEMYNAWLQTRV*

Click here to download the sequence:
Link to NCBI Protein BLAST