Transcript Information: S_Transcript_436330.p2


Annotated TAIR IDAT5G41980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16793765-16794889 | Forward length=374
E-Value4E-09
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.24789651188219
Replicate 30.41444350749664
Condition 2: 8 Hour
Replicate 10
Replicate 20.25136908583962
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_436330.p2 GENE.S_Transcript_436330~~S_Transcript_436330.p2 ORF type:5prime_partial len:89 (-),score=7.51 S_Transcript_436330:850-1116(-)
GAGATGCTTAGGAATGTTGGTAGGCTACAAGAAACTAGGAATACAAGTTTGGAGGAAATGGTTGCATTATTTCTATTCACACTTTCTCATGATACAAAAAACCGAAGAACACAACTACATTTTAGAAGAAGTGGAGAGACAATATCTAGACACTTCAATTCAGTTCTACGTGCAATTCTTAGATGTCACCATGTTTTATTAAGCAAACCCGAACCAGTGACGGAAAATTGTCAAGATGAGAGATGGAAGTGTTTCAAGGTATGCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_436330.p2 GENE.S_Transcript_436330~~S_Transcript_436330.p2 ORF type:5prime_partial len:89 (-),score=7.51 S_Transcript_436330:850-1116(-)
EMLRNVGRLQETRNTSLEEMVALFLFTLSHDTKNRRTQLHFRRSGETISRHFNSVLRAILRCHHVLLSKPEPVTENCQDERWKCFKVC*

Click here to download the sequence:
Link to NCBI Protein BLAST