Transcript Information: S_Transcript_438161.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value5E-05
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30.15789516744431
Condition 3: 24 Hour
Replicate 10.32362790356436
Replicate 20
Replicate 30.18682995855642


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_438161.p1 GENE.S_Transcript_438161~~S_Transcript_438161.p1 ORF type:5prime_partial len:135 (+),score=17.28 S_Transcript_438161:1-405(+)
TTGAAAACCTCATGGGTTGACTATCAGGTGCATAATCATATTGCTTCTATTAATCAGGGCAATAAATCAGTGAGTGAATTTTACACTGAATTGAAAACCTCATGGGATGAATATATGTCCTTGATTAGTCTGCCTATATGCACATGTGGCACTGGTAATAAATTTCTGGAAATCTTGCAAGAACAACAATTACTTCAATTTCTACTAAAGCTAAATGATGATTACAAGACTGCTCGTGGTAACATTTTAATGAGGCAACCTTTACCTTCTTTAAGTCAGGCCTATAGACTAATCTTACAAGAGGAAAAACAAAGGGAGTGTGGTAGTAGTGTTTCCCTTGGGATTGATACTGCAGCTATGGCAGCTCCTGTGCATAGGCAAGCTTCCAATAAGTCACATTTTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_438161.p1 GENE.S_Transcript_438161~~S_Transcript_438161.p1 ORF type:5prime_partial len:135 (+),score=17.28 S_Transcript_438161:1-405(+)
LKTSWVDYQVHNHIASINQGNKSVSEFYTELKTSWDEYMSLISLPICTCGTGNKFLEILQEQQLLQFLLKLNDDYKTARGNILMRQPLPSLSQAYRLILQEEKQRECGSSVSLGIDTAAMAAPVHRQASNKSHF*

Click here to download the sequence:
Link to NCBI Protein BLAST