Transcript Information: S_Transcript_438271.p1


Annotated TAIR IDAT5G53110.1
Annotated Gene NameRING/U-box superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:21529022-21533008 | Forward length=382
E-Value3E-21
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.69425220613514
Replicate 20
Replicate 30.80185809059133
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30.18535519656506
Condition 3: 24 Hour
Replicate 10
Replicate 20.19707662240302
Replicate 30.21932212526188


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_438271.p1 GENE.S_Transcript_438271~~S_Transcript_438271.p1 ORF type:5prime_partial len:115 (+),score=21.73,zf-RING_2|PF13639.2|1.9e-12,zf-rbx1|PF12678.3|7.1e-08,zf-C3HC4_2|PF13923.2|3.2e-07,zf-RING_11|PF17123.1|2.6e-06,zf-RING_11|PF17123.1|7.2e+03,zf-C3HC4|PF00097.21|4.4e-06 S_Transcript_438271:1-345(+)
GATAATCAAGCAGCCACAGCGGCCCAAGCCCAGCTCCAAGCCCAAATTCAAGCCCTTAATCTGGGCCCACAACAGCCGGAACTCAAGGGGCTTGACCAGCGTATCATAGATAGCTATCCAACGGTGGTGATTGGAGAAAGTGGAAGGATGATTAAGCCGGATGATGACACGTGTCCCATATGTTTGGCTGATTATCTTGCTAATGATATCCTCAAGATATTGCCAGAATGTTTGCATAGATATCATGCTGAGTGCTTGGATGAATGGTTAAGGTTCAATGCTTCCTGTCCTGTTTGTAGAGTTCATCCCCCTCATACTACTTCTCAGCCTGCTTTATTCATGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_438271.p1 GENE.S_Transcript_438271~~S_Transcript_438271.p1 ORF type:5prime_partial len:115 (+),score=21.73,zf-RING_2|PF13639.2|1.9e-12,zf-rbx1|PF12678.3|7.1e-08,zf-C3HC4_2|PF13923.2|3.2e-07,zf-RING_11|PF17123.1|2.6e-06,zf-RING_11|PF17123.1|7.2e+03,zf-C3HC4|PF00097.21|4.4e-06 S_Transcript_438271:1-345(+)
DNQAATAAQAQLQAQIQALNLGPQQPELKGLDQRIIDSYPTVVIGESGRMIKPDDDTCPICLADYLANDILKILPECLHRYHAECLDEWLRFNASCPVCRVHPPHTTSQPALFM*

Click here to download the sequence:
Link to NCBI Protein BLAST