Transcript Information: S_Transcript_43874.p1


Annotated TAIR IDAT5G20730.1
Annotated Gene NameTranscriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related
Annotated Gene Symbol(s)NPH4, MSG1, IAA21, ARF7, TIR5, BIP
Annotation TypeHomolog
Chromosome Positionchr5:7016704-7021504 | Reverse length=1165
E-Value2E-105
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 150.400216285326
Replicate 241.32839501899
Replicate 329.286246522611
Condition 2: 8 Hour
Replicate 130.044805058528
Replicate 226.059126387003
Replicate 326.585692654707
Condition 3: 24 Hour
Replicate 137.250546174135
Replicate 234.839773738601
Replicate 339.611800325626


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_43874.p1 GENE.S_Transcript_43874~~S_Transcript_43874.p1 ORF type:5prime_partial len:631 (+),score=161.29,AUX_IAA|PF02309.12|1.6e+04,AUX_IAA|PF02309.12|1.6e+04,AUX_IAA|PF02309.12|1.5e-08 S_Transcript_43874:2-1894(+)
AATCCTCAACAGCAGCCTCAGCAACAGCAGCAGCGACTGGATCAACAGCCCATGCAACAGCAGTTGCAGAAACAACAGTTACAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAGCAGCAACAACAACAACAGCAACAGCAGCGTCAGCAGCCGCAGCAGCAACAGCAGCAGCATCAGCAGCTACCAGCTCCACAAAAGCCACAAATGCCTCAATCAACCTTTGTAAATAGTGGTCTCGTCTCGCCTAACCAGAACCTGAGTCAGAGTATGCAGCAGCCCCCTGCGTACTCTCAGCCTCTCCAGCAGCAATTGCTGGCAGGAAATAACCAGGCCCTACAAAACCTCCCCACAAGCAAAGATTCTGTTCCGATAGTGTCCTTACCTCCAGATATGCAGTTTCAGCAGCAAGCGGAACAGCAAGGTATCGTTCTTCAGCGGCTTCAGCAGCAGCAGCAGTCAACACAGTTGCAACCATCATCGCAACAGTTGCTTCAAGAGAGCCTATCACAGAGGCCATCTGTTATGCAGAGCCTCTCCGAACATCAGCTCCAAGTGCAGCTGCTCCAAAAATTACAGCAGCAACAACAGTCTCAGACTCTGCCTCAGCAACTGCAACCACAGATGCAGCAGCAACAACAGCAACAGCAATCACAATCACATCAGTTGCTGTCTCCTGTTAGCACACATGTCCAACCTCAAGCAACAACCCAACAAGTTGCTCCCCAACAAAACCCAATGTTCCAACAGCGTCCTTTACCTCACTTTCAGTCACAACAAGTGGGTGTAAGCTCCGTTTCAACGCCATCATTTATGACTCCGCAGGTTCCACCTGTCCAGCTCCAAGGATTGCAGAAAACAGTTCCCTTGGTAAGATCTCAATCTGGCCCGACAGATGGAGATCCTCCATCGTGTTCGACATCACCTTCGACAAATAATTGTCAGATTCCCCCTTCTAGCTTCTTAAACCGCAGCCAGACAGCAAGAAACATGCTAGTTGATCATTCAATTGTTGAACCCAATGGTCATTTGGTTCAAGATCCTCTAGAGAAATCCGACATTAGGATCAAGCATGAAATTCCCAGCTCAAAAGTAGTAGAACCGCCAAGATTCAATGGCACCATTACCGATCCACTGGAGGCATCCTCTTCTGTTATTTCGTATGGGTTGGATGCTAGTGGGCTTCAACAGAATCTATCGCTTCCCAGCTTTGGGTTGGATGGAGATGTACAGTCTCATCCAAGGAACGGTCTTCCTTTATCAACTACAATGGATGGTTTGACTCCTGATACTTTGTTGTCAAGGGGTTTTGACTCAGGAAAAGAGCTCCACAACTTGCTTAATTACCCTGGTGCTCCTCGGGATATTGAAACGGAATTGTCAGCTGCTGGTATGAGCTCTCAGTCATTTGGAATCTCAAATATGCCGTTCAAGACTGGATGCTCGAATGATGTTGCAATTAATGACCCTGCAGTTTTTGGTGGTGGGATGTGGCCCAGTCAGACTCAACGTATGAGGACATATACAAAGGTTCACAAGCGTGGCTCAGTTGGTAGATCCATTGATGTAACTCGTTACAAGGGCTATGATGAGCTTCGGCGTGATCTTGCTCGCATGTTTGGCATTGAAGGACAGCTGGAAGATCCTCAGAGGACAGATTGGAAACTCGTCTATGTTGATCATGAAAATGACATACTCCTAGTGGGCGACGATCCATGGGATGAATTCGTGAACTGTGTCCAAAGCATAAAGATACTATCATCTGTGGAGGTACAGCAGATGAGCTTGGATGGGGATTTGGGTAATGGACCAATCCCGAACCAAGCTTCCAGTGGGACGGACAGTGGCAATGCCTGGAGAGGACACTACGACGATAGCTCCTCTTTCAACTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_43874.p1 GENE.S_Transcript_43874~~S_Transcript_43874.p1 ORF type:5prime_partial len:631 (+),score=161.29,AUX_IAA|PF02309.12|1.6e+04,AUX_IAA|PF02309.12|1.6e+04,AUX_IAA|PF02309.12|1.5e-08 S_Transcript_43874:2-1894(+)
NPQQQPQQQQQRLDQQPMQQQLQKQQLQQQQQQQQQQQQQQQQQQQQQRQQPQQQQQQHQQLPAPQKPQMPQSTFVNSGLVSPNQNLSQSMQQPPAYSQPLQQQLLAGNNQALQNLPTSKDSVPIVSLPPDMQFQQQAEQQGIVLQRLQQQQQSTQLQPSSQQLLQESLSQRPSVMQSLSEHQLQVQLLQKLQQQQQSQTLPQQLQPQMQQQQQQQQSQSHQLLSPVSTHVQPQATTQQVAPQQNPMFQQRPLPHFQSQQVGVSSVSTPSFMTPQVPPVQLQGLQKTVPLVRSQSGPTDGDPPSCSTSPSTNNCQIPPSSFLNRSQTARNMLVDHSIVEPNGHLVQDPLEKSDIRIKHEIPSSKVVEPPRFNGTITDPLEASSSVISYGLDASGLQQNLSLPSFGLDGDVQSHPRNGLPLSTTMDGLTPDTLLSRGFDSGKELHNLLNYPGAPRDIETELSAAGMSSQSFGISNMPFKTGCSNDVAINDPAVFGGGMWPSQTQRMRTYTKVHKRGSVGRSIDVTRYKGYDELRRDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWDEFVNCVQSIKILSSVEVQQMSLDGDLGNGPIPNQASSGTDSGNAWRGHYDDSSSFN*

Click here to download the sequence:
Link to NCBI Protein BLAST