Transcript Information: S_Transcript_43896.p2


Annotated TAIR IDAT3G24255.1
Annotated Gene NameRNA-directed DNA polymerase (reverse transcriptase)-related family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:8789471-8793208 | Forward length=746
E-Value1E-20
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.1509034648736
Replicate 23.1205434361745
Replicate 32.8373440128616
Condition 2: 8 Hour
Replicate 14.2333281026567
Replicate 25.8288935661819
Replicate 36.5587223399943
Condition 3: 24 Hour
Replicate 14.0112193010024
Replicate 23.2055515132799
Replicate 33.8177288057372


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_43896.p2 GENE.S_Transcript_43896~~S_Transcript_43896.p2 ORF type:complete len:403 (+),score=51.96,RVT_1|PF00078.23|3.2e-17,RVT_1|PF00078.23|5.4e+03 S_Transcript_43896:3886-5094(+)
ATGCTTTTCTCCTTTAATTTTGATCATCACTCTATCTACCTCATTATGGAGTGTATCACCTCTGTTACTACTTCTATCCTTGTCAATGGGGGGATCACTGAGGAATTCAAACCTTCCCAGGGCTTGAGACAGGGAGACCCTCTCTCACCCTACATTTTCATCCTATGTATGGAGTTTTTATCAAAACTCATCCATAATGCTTGTGATGAGGGAAATTGGTCCCCCTTCTCCTTCACTCACTTAGGCTTGTCCATCTCCCACCTCCTCTTTGCGGATGATGTCATCCTCTTTGGAGAGGCCAACCCCAGAACCCTAGCTGCTATGACCTCTACCTTACATTCCTTTTGCCAAGCCTCGGGTCAACAAATTAATGCAAACATAAGCAAGTTGTTCTTCTCTCCAAACACCTCAGCTGAGATGATCCAGACCTTTGAGGACTCCCTGGGTACTAGTGCTTCTGGAGACCTAGGGATTTACCTTGGCCTACCTTTGACCATTAAGAGGCTCACAAAGAATCAGCTCCGAGGCATTGTGTCCAAAGTTAGAGATAGGCTTGCATCCTGGAAGACAAACTTCGTCACGAAAGCTGGTAGGATGTGTCTTATTAATGCAACACTTAATGCCATCCCAAATTACTTCATGCATGGAATAGCCTTCCCTAAAAGCCTGACAACTAAGATGAATAAAATTGTTAACAACTTTCTTAGGGAGGATTCCTTGGATCATAAGAAACTGCATCTAGTGAGTTGGGAAACTGTCACCAACCTCAAGAAGCAAGGAGGGCTAGGAATTAGAGATCTCAAAGATTTGAATCTAGCTCTCATGGCCAAGCTTGGGTGGAAATCCCTCTTAGCTGAGGACAATCTGGCTAGGCAGGTCCTCAAGGACAAATATATTAACAACAAGCCCTATCCCACCAACTTTGGAGCTGGCTCCCATGTGTGGCAAGACATAGGTAAGGGTTGGGACATCATTGATGGACATGTCTTATGGACCTTGGGTAATGGATCCTCCATTCTGTTTTGGACCGATCAGTGGCTTTCTTGTGGTAGATTGAGAGACCTCATTGAAGGTCCCCTTACTCCCCAGGAAATTACTCTAAAGGTCAGAGACTGCCTGACCAACAACACCTGGGATCTTAATAAAATTTTCTTCACTCTCCCCCAGGTAATCATGGACTGCATCCTCTTTTCCCCCCATCCCTTCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_43896.p2 GENE.S_Transcript_43896~~S_Transcript_43896.p2 ORF type:complete len:403 (+),score=51.96,RVT_1|PF00078.23|3.2e-17,RVT_1|PF00078.23|5.4e+03 S_Transcript_43896:3886-5094(+)
MLFSFNFDHHSIYLIMECITSVTTSILVNGGITEEFKPSQGLRQGDPLSPYIFILCMEFLSKLIHNACDEGNWSPFSFTHLGLSISHLLFADDVILFGEANPRTLAAMTSTLHSFCQASGQQINANISKLFFSPNTSAEMIQTFEDSLGTSASGDLGIYLGLPLTIKRLTKNQLRGIVSKVRDRLASWKTNFVTKAGRMCLINATLNAIPNYFMHGIAFPKSLTTKMNKIVNNFLREDSLDHKKLHLVSWETVTNLKKQGGLGIRDLKDLNLALMAKLGWKSLLAEDNLARQVLKDKYINNKPYPTNFGAGSHVWQDIGKGWDIIDGHVLWTLGNGSSILFWTDQWLSCGRLRDLIEGPLTPQEITLKVRDCLTNNTWDLNKIFFTLPQVIMDCILFSPHPF*

Click here to download the sequence:
Link to NCBI Protein BLAST