Transcript Information: S_Transcript_43985.p1


Annotated TAIR IDAT2G40830.2
Annotated Gene NameRING-H2 finger C1A
Annotated Gene Symbol(s)RHC1A
Annotation TypeOrtholog
Chromosome Positionchr2:17043642-17044628 | Forward length=328
E-Value4.3E-94
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 143.774656237306
Replicate 247.768344992127
Replicate 343.435228907171
Condition 2: 8 Hour
Replicate 138.930463320374
Replicate 235.613752819004
Replicate 332.870232288055
Condition 3: 24 Hour
Replicate 139.130243012747
Replicate 237.984830617056
Replicate 334.336552663663


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_43985.p1 GENE.S_Transcript_43985~~S_Transcript_43985.p1 ORF type:complete len:321 (+),score=42.15,zf-RING_2|PF13639.2|2.7e+02,zf-RING_2|PF13639.2|1.5e-12,zinc_ribbon_9|PF14369.2|3.9e-11,zinc_ribbon_9|PF14369.2|27,zinc_ribbon_9|PF14369.2|2e+03,zf-RING_11|PF17123.1|1e-07,zf-RING_11|PF17123.1|7.7e+03,zf-rbx1|PF12678.3|5e+03,zf-rbx1|PF12678.3|2e-07,zf-C3HC4_2|PF13923.2|1e+03,zf-C3HC4_2|PF13923.2|5.3e-07 S_Transcript_43985:486-1448(+)
ATGTCTAGTGGTGGAAATACACACTGGTGTTATCAATGCAGGCTGCCAGTTCGACCTCGAAGCCGGGGTATGGTTTGCCCTCATTGCAATGGAGGTTTTGTTCAGGAGTTGGGGGAATTAGGTGGTGGTGTTGGTGGTGGGTATGCTCCCTATGGATTTCGGGATGGTCCTGATCAATTGTATGGAATTATGGAAGCTTTGGACTCTATGACGCTTCGTAATAACCCTGAACATCGATTCGGATTGATGGAAGCGTTGGATGCTTTTATAGGCCAAAGGAGGAGATATGGTGTGGAGGCGGAGCGCAGTCCTTGGTTGATTTTTCAAGGACAGTTACCTGGTAGGATGCCTAGGAGTGAACGGTTTGAGATGTTCTTTAATGGAGGACCGGGGATTGGGTTCAGTCGAGGCAATAATGGTGATTTATTTGTTGGGCCGGGTTTGCAGGAGTTGATAGAGCAGCTTATGACTGATCGACAGGGTCCACCACCCGCACCACGTTCTGCTATTGATGCAATGCCTACTGTCAAGATCACTCGTGCACATCTGCAGACTGATTCCCATTGCCCCGTTTGTAAAGACCAATTCGAGTTGGGAACTGAAGTAAGACAGATGCCATGTAACCACATATATCACTCTGATTGTATTGTCCCTTGGTTGGTTCAGCACAATTCGTGCCCCGTTTGTCGCCATGTATTGGGCTCTAGCCCTCCCAGTCGCGGTCAAAGCTCGATGAGTGGAAACAGAAGTAGTTCTGGTAGCAGTAGAAGAGGCGGGGAAAGTAGTGATCAAAGCCAAGGCAGGAGGAATCCGTTCTCGTTCCTGTGGCCTTTCCGCTCATCCAACACTAGCAGCAGCCGAGAATACGCAGGAACTGGTTCTAGCAGCCCAGCAACAACTACAACTCACAGTCACGGAGAGAATCGTGAGATGAACTACTCTGGATGGCCTTTTGATTACTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_43985.p1 GENE.S_Transcript_43985~~S_Transcript_43985.p1 ORF type:complete len:321 (+),score=42.15,zf-RING_2|PF13639.2|2.7e+02,zf-RING_2|PF13639.2|1.5e-12,zinc_ribbon_9|PF14369.2|3.9e-11,zinc_ribbon_9|PF14369.2|27,zinc_ribbon_9|PF14369.2|2e+03,zf-RING_11|PF17123.1|1e-07,zf-RING_11|PF17123.1|7.7e+03,zf-rbx1|PF12678.3|5e+03,zf-rbx1|PF12678.3|2e-07,zf-C3HC4_2|PF13923.2|1e+03,zf-C3HC4_2|PF13923.2|5.3e-07 S_Transcript_43985:486-1448(+)
MSSGGNTHWCYQCRLPVRPRSRGMVCPHCNGGFVQELGELGGGVGGGYAPYGFRDGPDQLYGIMEALDSMTLRNNPEHRFGLMEALDAFIGQRRRYGVEAERSPWLIFQGQLPGRMPRSERFEMFFNGGPGIGFSRGNNGDLFVGPGLQELIEQLMTDRQGPPPAPRSAIDAMPTVKITRAHLQTDSHCPVCKDQFELGTEVRQMPCNHIYHSDCIVPWLVQHNSCPVCRHVLGSSPPSRGQSSMSGNRSSSGSSRRGGESSDQSQGRRNPFSFLWPFRSSNTSSSREYAGTGSSSPATTTTHSHGENREMNYSGWPFDY*

Click here to download the sequence:
Link to NCBI Protein BLAST